Info • Pedinomonas minor SAG 1965-3


The Pedinomonas minor SAG 1965-3 genome assembly and gene models have not been determined by the JGI, but were downloaded from the CNGB Nucleotide Sequence Archive (accession no. CNP0002569) on September 16, 2022. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. Please note that this copy of the genome is not maintained by CNGB and is therefore not automatically updated.

We applied filters to remove if present: 1) transposable elements, 2) pseudogenes, 3) alternative transcripts and overlapping models, and 4) unsupported short models. This resulted in removal of 709 models from P. minor and generation of the FilteredModels1 gene track. All published models are available in the ExternalModels track. The JGI Annotation Pipeline was used to add functional annotation to this genome.

Genome Assembly
Genome Assembly size (Mbp) 54.97
Sequencing read coverage depth
# of contigs 101
# of scaffolds 85
# of scaffolds >= 2Kbp 85
Scaffold N50 9
Scaffold L50 (Mbp) 2.41
# of gaps 16
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.82, 3.66, 3.55

Gene Models FilteredModels1
length (bp) of: average median
gene 2992 2271
transcript 1576 1200
exon 185 139
intron 190 146
protein length (aa) 525 400
exons per gene 8.54 7
# of gene models 10504

Genome Reference(s)


This project was not sequenced at the JGI.