Info • Saprolegnia parasitica CBS 223.65


The genome sequence and gene models of Saprolegnia parasitica CBS 223.65 were not determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on October 20, 2017. In order to allow comparative analyses with other heterokont genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. JGI tools were used to automatically annotate predicted proteins. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.


Summary statistics for the Saprolegnia parasitica CBS 223.65 release are below.
Genome Assembly
Genome Assembly size (Mbp) 53.09
Sequencing read coverage depth
# of contigs 4125
# of scaffolds 1442
# of scaffolds >= 2Kbp 1442
Scaffold N50 46
Scaffold L50 (Mbp) 0.28
# of gaps 2683
% of scaffold length in gaps 9.3%
Three largest Scaffolds (Mbp) 1.62, 1.57, 1.28

Gene Models ExternalModels
length (bp) of: average median
gene 1522 1204
transcript 1347 1062
exon 337 182
intron 60 51
protein length (aa) 432 336
exons per gene 4.00 3
# of gene models 20113

Genome Reference(s)


This project was not sequenced at the JGI.