Info • Scenedesmus obliquus UTEX 393


The genome sequence and gene models of Scenedesmus obliquus UTEX 393 (Tetradesmus obliquus) were not determined by the Joint Genome Institute (JGI), but were downloaded from EBI, on November 18, 2019. In order to ensure this genome is comparable to those sequenced by the JGI, we applied filters to remove if present: 1) transposable elements, 2) pseudogenes, 3) alternative transcripts and overlapping models, 4) alleles on secondary scaffolds, and 5) unsupported short models. This resulted in removal of 2,944 models from S. obliquus and generation of the FilteredModels1 gene track. All published models are available in the ExternalModels track. JGI tools were used to automatically annotate predicted proteins. Please note that this copy of the genome is not maintained by EBI and is therefore not automatically updated.

Summary statistics for the Scenedesmus obliquus UTEX 393 release are below.
Genome Assembly
Genome Assembly size (Mbp) 107.72
Sequencing read coverage depth
# of contigs 1532
# of scaffolds 1368
# of scaffolds >= 2Kbp 1206
Scaffold N50 177
Scaffold L50 (Mbp) 0.19
# of gaps 164
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 1.11, 1.05, 0.64

Gene Models FilteredModels1
length (bp) of: average median
gene 4022 3177
transcript 1778 1341
exon 252 152
intron 373 310
protein length (aa) 593 447
exons per gene 7.05 6
# of gene models 16779

Genome Reference(s)


This project was not sequenced at the JGI.