Info • Yarrowia lipolytica YlCW001 v1.0

Status

[June 2019] The Yarrowia lipolytica YlCW001 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Yarrowia lipolytica YlCW001 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 20.22
Sequencing read coverage depth 166.48x
# of contigs 150
# of scaffolds 142
# of scaffolds >= 2Kbp 130
Scaffold N50 22
Scaffold L50 (Mbp) 0.30
# of gaps 8
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.76, 0.70, 0.65


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 16328 15793 96.7%
Ests est.fasta 151880071 151415638 99.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1664 1429
transcript 1589 1374
exon 1228 1081
intron 256 152
description:
protein length (aa) 457 384
exons per gene 1.29 1
# of gene models 6800


Collaborators

Cong Trinh, University of Tennessee, Knoxville

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Walker C, Ryu S, Haridas S, Na H, Zane M, LaButti K, Barry K, Grigoriev IV, Trinh CT
Draft Genome Assemblies of Ionic Liquid-Resistant Yarrowia lipolytica PO1f and Its Superior Evolved Strain, YlCW001.
Microbiol Resour Announc. 2020 Feb 27;9(9):. doi: 10.1128/MRA.01356-19

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.