Phycocosm Portals

218	Name	Assembly Length	# of Genes	Publication
1	Trebouxia sp. A1-2	52,896,788	9,683	Greshake Tzovaras B et al., 2020
2	Limnomonas spitsbergensis CCryo_02-99_CH	260,248,090	14,963	Hulatt CJ et al., 2024
3	Tetrabaena socialis NIES-571	135,779,852	12,454	Featherston J et al., 2018
4	Galdieria sulphuraria Azora	14,055,766	5,830	Rossoni AW et al., 2019
5	Galdieria sulphuraria MS1	14,906,717	6,826	Rossoni AW et al., 2019
6	Cyanidioschyzon merolae Soos	12,336,830	4,224	Rossoni AW et al., 2019
7	Galdieria phlegrea Soos	14,871,243	5,850	Rossoni AW et al., 2019
8	Galdieria sulphuraria 5572	14,288,869	6,091	Rossoni AW et al., 2019
9	Galdieria sulphuraria RT22	15,626,563	6,311	Rossoni AW et al., 2019
10	Galdieria sulphuraria MtSh	14,998,623	5,628	Rossoni AW et al., 2019
11	Galdieria sulphuraria SAG21.92	14,317,600	5,572	Rossoni AW et al., 2019
12	Galdieria sulphuraria 002	14,106,382	5,641	Rossoni AW et al., 2019
13	Galdieria sulphuraria YNP5578.1	14,439,647	5,658	Rossoni AW et al., 2019
14	Nannochloropsis salina CCMP1776	27,757,252	8,570	Ohan JA et al., 2019
15	Prymnesium parvum 12B1	93,538,114	22,090	Wisecaver JH et al., 2023
16	Chloropicon primus CCMP1205	17,400,691	8,504	Lemieux C et al., 2019
17	Nannochloropsis oceanica C018 v1.0	26,405,595	8,768
18	Chromochloris zofingiensis var. SAG 211-14 v6.0	58,777,831	16,265
19	Bacillariophyceae sp. bin 90 v1.0	32,074,741	13,169
20	Galdieria yellowstonensis 108.79 E11	14,511,588	6,501	Cho CH et al., 2023
21	Cyanidium caldarium DBV 063 E5	8,787,356	4,770	Cho CH et al., 2023
22	Cyanidiococcus yangmingshanensis 8.1.23 F7	12,020,148	4,748	Cho CH et al., 2023
23	Rhodosorus marinus CCMP1338	31,189,410	8,045	Lee Y et al., 2023
24	Scenedesmus obliquus UTEX 3031 haplotype 1	101,592,434	11,826	Biondi Thomas C. et al., 2024
25	Scenedesmus obliquus UTEX 3031 haplotype 2	103,421,150	12,494	Biondi Thomas C. et al., 2024
26	Conticribra weissflogii CCMP 1336	231,500,930	19,531	Li L et al., 2021
27	Gracilaria caudata M-176 S67	30,776,005	8,185	Lipinska AP et al., 2023
28	Gracilaria chilensis NLEC103-M9	79,767,677	7,217	Lipinska AP et al., 2023
29	Entomoneis sp. UTEX 11IV18-2A FL v1.0	459,747,087	32,720
30	Scenedesmus obliquus SAG 2326 v1.0	104,249,355	17,007
31	Scenedesmus sp. WC-1 v1.0	102,320,957	17,012
32	Scenedesmus dimorphus UTEX 1237 v1.0	102,569,700	17,373
33	Haematococcus lacustris Liv1 v1.2	291,505,220	21,373
34	Haematococcus lacustris NIES-144	171,794,631	28,279	Morimoto D et al., 2020
35	Volvox reticuliferus NIES-3786	133,961,728	12,974	Yamamoto K et al., 2021
36	Volvox africanus NIES-3780	129,328,469	12,622	Yamamoto K et al., 2021
37	Volvox reticuliferus NIES-3785	133,065,142	13,178	Yamamoto K et al., 2021
38	Gracilaria gracilis GNS1m	76,009,156	8,693	Lipinska AP et al., 2023
39	Gracilaria vermiculophylla HapMaleFtJ-2017	45,957,138	6,327	Lipinska AP et al., 2023
40	Sargassum fusiforme	394,427,661	17,495	Wang S et al., 2020
41	Chlorella sorokiniana DOE1412	57,881,618	10,257	Hovde Blake T. et al., 2018
42	Chlorella sorokiniana UTEX 1602	59,371,605	9,245	Arriola MB et al., 2018
43	Chlorella sorokiniana UTEX 1230	58,534,920	12,209	Hovde Blake T. et al., 2018
44	Chlorella sorokiniana strain 1228	61,391,260	11,701	Hovde Blake T. et al., 2018
45	Micractinium conductrix SAG 241.80	60,773,875	8,739	Arriola MB et al., 2018
46	Auxenochlorella protothecoides UTEX 25	21,217,637	5,688	Vogler Brian W. et al., 2018
47	Nannochloropsis oceanica CCAP849/10	29,986,049	10,044
48	Seminavis robusta D6	125,572,603	33,143	Osuna-Cruz CM et al., 2020
49	Chlamydomonas eustigma NIES-2499	66,605,202	13,365	Hirooka S et al., 2017
50	Trebouxiophyceae sp. bin 3300059473_978 v1.0	16,200,188	7,783
51	Trebouxiophyceae sp. bin 3300059473_6682 v1.0	18,077,445	8,628
52	Chlorellaceae sp. bin 3300059473_4402 v1.0	14,333,578	8,227
53	Chlorellaceae sp. bin 3300059473_4966 v1.0	14,819,488	8,098
54	Amoebophrya ceratii AT5.2	87,690,817	18,158	John U et al., 2019
55	Undaria pinnatifida M23	511,280,173	12,499	Shan T et al., 2020
56	Neopyropia yezoensis U-51	43,483,963	8,598	Nakamura Y et al., 2013
57	Prasinoderma coloniale CCMP1413	25,323,194	6,927	Li L et al., 2020
58	Fistulifera solaris JPCC DA0580	49,736,633	14,395	Tanaka T et al., 2015
59	Proteomonas sulcata CCMP 1175 v1.1	270,343,095	34,130
60	Chloromonas remiasii CCCryo 005-99 v1.0	493,134,015	38,828
61	Polarella glacialis CCMP2088	2,147,483,647	34,066	Stephens TG et al., 2020
62	Polarella glacialis CCMP1383	2,147,483,647	37,736	Stephens TG et al., 2020
63	Paulinella micropora KR01	707,124,085	15,326	Lhee D et al., 2021
64	Cyclotella cryptica CCMP332 v2.0	171,139,483	14,429	Traller JC et al., 2016
65	Chlorokybus atmophyticus CCAC 0220	74,335,726	8,693	Wang S et al., 2020
66	Mesostigma viride NIES-296	441,698,809	16,232	Liang Z et al., 2020
67	Mesotaenium endlicherianum SAG12.97	173,768,482	10,300	Cheng S et al., 2019
68	Gracilaria domingensis SP 400837	77,739,776	9,746	Nakamura-Gouvea N et al., 2022
69	Raphidocelis subcapitata NIES-35	51,162,697	13,088	Suzuki S et al., 2018
70	Botryococcus braunii Showa	170,200,492	13,943	Browne DR et al., 2017
71	Mesostigma viride CCAC 1140	281,412,241	8,789	Wang S et al., 2020
72	Spirogloea muscicola CCAC 0214	171,136,975	24,093	Cheng S et al., 2019
73	Klebsormidium nitens NIES-2285 v1.1	103,921,766	15,568	Hori K et al., 2014
74	Astrephomene gubernaculifera NIES-4017	103,829,650	13,067	Yamashita S et al., 2021
75	Chlamydomonas reinhardtii CC-4532 v6.1	114,035,500	16,090	Craig RJ et al., 2023
76	Mayamaea pseudoterrestris NIES-4280	30,627,229	10,680	Suzuki S et al., 2022
77	Fragilaria crotonensis SAG 28.96	61,849,504	18,721	Zepernick BN et al., 2022
78	Chaetoceros tenuissimus NIES-3715	41,001,288	17,253	Hongo Y et al., 2021
79	Ostreobium quekettii SAG 6.99	151,902,089	9,649	Iha Cintia et al., 2021
80	Nitzschia putrida NIES-4239	34,998,307	13,794	Kamikawa R et al., 2022
81	Nannochloropsis gaditana CCMP1894	30,865,741	8,928	Schwartz AS et al., 2018
82	Alaria esculenta A1	487,803,962	18,078	Bringloe TT et al., 2022
83	Nannochloris desiccata UTEX 2526	21,550,525	8,818	Sanders CK et al., 2022
84	Helicosporidium sp. ATCC 50920	12,373,820	5,602	Pombert JF et al., 2014
85	Nannochloris desiccata UTEX 2437	20,738,005	7,973	Sanders CK et al., 2022
86	Monodopsis strain C73	59,696,957	12,958	Yang HP et al., 2021
87	Monodopsis strain C141	60,466,283	12,961	Yang HP et al., 2021
88	Vischeria strain C74	106,485,303	15,625	Yang HP et al., 2021
89	Macrocystis pyrifera CI_03 v1.0	537,452,659	25,919	Diesel J et al., 2023
90	Pedinomonas minor SAG 1965-3	54,966,539	10,504	Xu Y et al., 2022
91	Pedinophyceae sp. YPF-701	27,899,919	7,759	Repetti SI et al., 2022
92	Zygnema cf. cylindricum SAG 698-1a	359,785,760	14,200	Feng Xuehuan et al., 2023
93	Zygnema circumcarinatum UTEX 1559	71,310,527	12,038	Feng Xuehuan et al., 2023
94	Zygnema circumcarinatum UTEX 1560	67,280,745	12,436	Feng Xuehuan et al., 2023
95	Scenedesmus obliquus UTEX 3031	205,013,584	13,349	Biondi Thomas C. et al., 2024
96	Coccomyxa subellipsoidea C-169 v3.0	48,852,666	10,893	Blanc G et al., 2012
97	Porphyridium purpureum CCMP1328	22,192,338	8,278	Bhattacharya D et al., 2013
98	Microglena sp. YARC	572,689,865	19,590	Ye N et al., 2022
99	Micromonas sp. AD1 metagenome extracted assembly	21,112,593	11,269	Duncan A et al., 2022
100	Mesotaenium kramstae Lemmermann NIES-657 v3.0	331,691,281	15,982
101	Scenedesmus obliquus UTEX 393 v2.0	107,859,680	19,017
102	Cafeteria roenbergensis BVI	36,283,887	8,555	Hackl T et al., 2020
103	Chlamydomonas priscuii UWO241	211,641,456	14,754	Stahl-Rommel S et al., 2022
104	Monoraphidium minutum 26B-AM v1.0	68,170,630	15,337	Calhoun Sara et al., 2022
105	Tetradesmus deserticola SNI-2 v1.1	198,160,740	17,197
106	Flechtneria rotunda SEV3VF49 v1.1	76,784,650	16,599
107	Tetradesmus obliquus UTEX 72 v1.1	107,156,682	16,985
108	Enallax costatus CCAP 276/31 v1.1	127,564,975	19,308
109	Hyphochytrium catenoides ATCC 18719	68,540,538	18,481	Leonard G et al., 2018
110	Desmodesmus armatus UTEX B 2533 v2.0	122,633,162	15,634
111	Chromera velia CCMP2878	193,889,730	24,133	Woo YH et al., 2015
112	Labyrinthula sp. SR_Ha_C	50,948,119	8,488	Tan MH et al., 2021
113	Hondaea fermentalgiana CCAP_4062/3	38,943,350	11,853	Seddiki K et al., 2018
114	Nitzschia inconspicua GAI-293 v2.0	99,706,970	17,968	Oliver A et al., 2021
115	Tribonema minus UTEX B 3156 v1.0	158,345,074	18,290	Mahan KM et al., 2021
116	Hyaloperonospora arabidopsidis Emoy2 v2.0	78,897,814	9,138	Baxter L et al., 2010
117	Scenedesmus obliquus var. DOE0013 v1.0	102,771,905	15,938
118	Scenedesmus obliquus var. UTEX 1450 v1.0	104,043,312	16,565
119	Scenedesmus obliquus var. UTEX2630 v1.0	106,020,692	16,604
120	Fugacium kawagutii CCMP2468	1,048,482,934	26,609	Lin S et al., 2015
121	Cladocopium goreaui SCF055-01	1,027,792,016	35,913	Liu H et al., 2018
122	Breviolum minutum	609,476,485	47,014	Shoguchi E et al., 2013
123	Nemacystus decipiens Onna-1	153,973,811	17,099	Nishitsuji K et al., 2019
124	Chlamydomonas schloesseri CCAP 11/173	130,201,002	16,268	Craig RJ et al., 2021
125	Picocystis sp. ML	29,463,432	5,613	Junkins EN et al., 2019
126	Chlamydomonas incerta SAG 7.73	129,236,421	16,957	Craig RJ et al., 2021
127	Edaphochlamys debaryana CCAP 11/70	142,143,002	20,450	Craig RJ et al., 2021
128	Cladosiphon okamuranus S strain	169,730,755	14,750	Nishitsuji K et al., 2016
129	Picochlorum renovo	14,391,424	9,010	Dahlin LR et al., 2019
130	Picochlorum soloecismus DOE101	15,252,578	6,861	Gonzalez-Esquer CR et al., 2018
131	Chlorella sp. A99	40,934,037	8,298	Hamada M et al., 2018
132	Cyanophora paradoxa CCMP329	98,351,904	25,518	Price DC et al., 2019
133	Tetraselmis striata	232,085,675	46,696	Steadman Tyler CR et al., 2019
134	Chara braunii S276	1,750,992,823	35,672	Nishiyama T et al., 2018
135	Vitrella brassicaformis CCMP3155	72,700,666	21,239	Woo YH et al., 2015
136	Ochromonas sp. CCMP1393 v1.4	56,491,843	19,714
137	Paraphysomonas imperforata CCMP1604 v1.4	67,191,102	17,134
138	Minidiscus variabilis CCMP495 v1.0	76,188,022	25,179
139	Scenedesmus sp. NREL 46B-D3 v1.0	151,896,789	17,399	Calhoun S et al., 2021
140	Caulerpa lentillifera	28,654,260	8,818	Arimoto A et al., 2019
141	Chlamydomonas reinhardtii CC-503 v5.6	111,100,715	16,403	Merchant SS et al., 2007
142	Volvox carteri v2.1	131,163,211	13,076	Prochnik SE et al., 2010
143	Scenedesmus obliquus EN0004 v1.0	100,077,845	15,053
144	Reticulomyxa filosa	101,867,045	39,963	Glöckner G et al., 2014
145	Tetrahymena thermophila SB210	103,014,375	26,994	Eisen JA et al., 2006
146	Plasmodium falciparum 3D7	23,326,872	5,392	Gardner MJ et al., 2002
147	Toxoplasma gondii ME49	65,668,120	8,318	Kissinger JC et al., 2003
148	Oxytricha trifallax JRB310	67,158,112	24,578	Swart EC et al., 2013
149	Paramecium tetraurelia d4_2	72,094,543	39,580	Aury JM et al., 2006
150	Trichomonas vaginalis G3	176,420,065	59,679	Carlton JM et al., 2007
151	Trypanosoma brucei brucei TREU927	26,075,494	8,787	Berriman M et al., 2005
152	Giardia intestinalis ATCC 50803	11,213,615	6,502	Morrison HG et al., 2007
153	Phaeocystis antarctica CCMP1374 v2.2	198,936,094	37,754
154	Phaeocystis globosa Pg-G v2.3	155,849,266	30,220
155	Chondrus crispus Stackhouse	104,980,420	9,808	Collén J et al., 2013
156	Cyanidioschyzon merolae strain 10D	16,546,747	4,803	Nozaki H et al., 2007
157	Galdieria sulphuraria 074W	13,712,004	7,174	Schönknecht G et al., 2013
158	Symbiodinium microadriaticum CCMP2467	808,226,712	43,403	Aranda M et al., 2016
159	Chrysochromulina tobin CCMP291	59,073,094	16,770	Hovde BT et al., 2015
160	Nannochloropsis oceanica CCMP1779 v2.0	36,454,932	10,641
161	Symbiochloris reticulata Scotland extracted metagenome v1.0	59,360,525	12,315
162	Symbiochloris reticulata Switzerland extracted metagenome v1.0	59,348,134	12,701
163	Symbiochloris reticulata Spain extracted metagenome v1.0	56,841,181	12,144
164	Symbiochloris reticulata Africa extracted metagenome v1.0	58,569,719	12,720
165	Porphyra umbilicalis isolate 4086291	87,888,981	13,567	Brawley SH et al., 2017
166	Nannochloropsis gaditana B-31	27,589,342	10,929	Corteggiani Carpinelli E et al., 2014
167	Blastocystis hominis Singapore isolate B (sub-type 7)	18,817,245	6,020	Denoeud F et al., 2011
168	Saprolegnia parasitica CBS 223.65	53,093,248	20,113	Jiang RH et al., 2013
169	Ectocarpus siliculosus Ec 32	195,810,619	16,271	Cock JM et al., 2010
170	Phytophthora infestans T30-4	228,543,505	17,797	Haas BJ et al., 2009
171	Thalassiosira oceanica CCMP1005	92,185,637	34,642	Lommer M et al., 2012
172	Auxenochlorella protothecoides 0710	22,924,637	7,013	Gao C et al., 2014
173	Sorghum bicolor	738,540,932	35,899	Paterson AH et al., 2009
174	Ostreococcus tauri RCC4221 v3.0	12,916,858	7,669	Blanc-Mathieu R et al., 2014
175	Ostreococcus tauri RCC1115 v1.0	14,904,543	8,218	Blanc-Mathieu R et al., 2017
176	Cryptophyceae sp. CCMP2293 v1.0	534,466,773	33,051	Dorrell RG et al., 2023
177	Pavlovales sp. CCMP2436 v1.0	165,407,586	26,034	Dorrell RG et al., 2023
178	Pelagophyceae sp. CCMP2097 v1.0	85,824,453	19,402	Dorrell RG et al., 2023
179	Ochromonadaceae sp. CCMP2298 v1.0	61,140,752	20,195	Dorrell RG et al., 2023
180	Symbiochloris reticulata Spain reference genome v1.0	58,316,282	12,582
181	Micromonas commoda NOUM17 (RCC 299)	20,989,326	10,262	Worden AZ et al., 2009
182	Micromonas pusilla CCMP1545	21,945,545	9,829	Worden AZ et al., 2009
183	Asterochloris glomerata Cgr/DA1pho v2.0	55,816,160	10,025	Armaleo D et al., 2019
184	Emiliania huxleyi CCMP1516 v1.0	167,727,055	33,341	Read BA et al., 2013
185	Naegleria gruberi v1.0	40,964,085	15,763	Fritz-Laylin LK et al., 2010
186	Phytophthora sojae v3.0	82,601,618	26,584	Tyler BM et al., 2006
187	Phytophthora ramorum v1.1	66,652,401	15,743	Tyler BM et al., 2006
188	Aureococcus anophagefferens clone 1984 v1.0	56,660,578	11,501	Gobler CJ et al., 2011
189	Phaeodactylum tricornutum	1,311,968	377	Bowler C et al., 2008
190	Chlorella variabilis NC64A v1.0	46,159,515	9,791	Blanc G et al., 2010
191	Selaginella moellendorffii v1.0		22,285	Banks JA et al., 2011
192	Ostreococcus sp. RCC809	13,296,292	3,174
193	Ostreococcus lucimarinus	13,204,888		Palenik B et al., 2007
194	Physcomitrium patens v1.1	479,985,347	35,938	Rensing SA et al., 2008
195	Arabidopsis lyrata	206,667,935		Hu TT et al., 2011
196	Schizochytrium aggregatum ATCC 28209 v1.0	40,854,260	10,612
197	Aplanochytrium kerguelense PBS07 v1.0	35,774,161	11,892
198	Aurantiochytrium limacinum ATCC MYA-1381 v1.0	60,926,267	14,859
199	Phytophthora cinnamomi var cinnamomi v1.0	77,967,402	26,131
200	Pseudo-nitzschia multiseries CLN-47	218,730,801	19,703
201	Bigelowiella natans CCMP2755 v1.0	94,701,163	21,708	Curtis BA et al., 2012
202	Guillardia theta CCMP2712 v1.0	87,159,915	24,840	Curtis BA et al., 2012
203	Phytophthora capsici LT1534 v11.0	64,023,748	19,805	Lamour KH et al., 2012
204	Fragilariopsis cylindrus CCMP 1102	80,540,407	21,066	Mock T et al., 2017
205	Thalassiosira pseudonana CCMP 1335	1,135,583	386	Bowler C et al., 2008
206	Phaeodactylum tricornutum CCAP 1055/1 v2.0	26,138,756	10,025	Bowler C et al., 2008
207	Thalassiosira pseudonana CCMP 1335 v3.0	31,301,782	11,390	Armbrust EV et al., 2004
208	Chrysochromulina parva Lackey	65,764,750	24,838	Hovde Blake T. et al., 2019
209	Diacronema lutheri NIVA-4/92	43,502,671	13,777	Hulatt CJ et al., 2021
210	Saccharina japonica str. Ja	548,536,073	18,732	Ye N et al., 2015
211	Gracilariopsis chorda SKKU-2015	92,180,038	8,855	Lee J et al., 2018
212	Gonium pectorale NIES-2863	148,806,073	16,290	Hanschen ER et al., 2016
213	Monoraphidium neglectum SAG 48.87	69,711,829	16,755	Bogen C et al., 2013
214	Zygnema circumcarinatum SAG 698-1b	70,999,792	10,678	Feng Xuehuan et al., 2023
215	Bathycoccus prasinos RCC1105	15,074,320	7,900	Moreau H et al., 2012
216	Ulva mutabilis Foyn	98,484,689	11,066	De Clerck O et al., 2018
217	Dunaliella salina CCAP19/18	343,704,392	18,801	Polle Juergen E. W. et al., 2017
218	Populus trichocarpa v1.1	485,510,911	45,555	Tuskan GA et al., 2006