Phycocosm Portals

187	Name	Assembly Length	# of Genes	Publication
1	Paulinella micropora KR01	707,124,085	15,326	Lhee D et al., 2021
2	Cyclotella cryptica CCMP332 v2.0	171,139,483	14,429	Traller JC et al., 2016
3	Chlorokybus atmophyticus CCAC 0220	74,335,726	8,693	Wang S et al., 2020
4	Mesostigma viride NIES-296	441,698,809	16,232	Liang Z et al., 2020
5	Mesotaenium endlicherianum SAG12.97	173,768,482	10,300	Cheng S et al., 2019
6	Gracilaria domingensis SP 400837	77,739,776	9,746	Nakamura-Gouvea N et al., 2022
7	Raphidocelis subcapitata NIES-35	51,162,697	13,088	Suzuki S et al., 2018
8	Botryococcus braunii Showa	170,200,492	13,943	Browne DR et al., 2017
9	Mesostigma viride CCAC 1140	281,412,241	8,789	Wang S et al., 2020
10	Spirogloea muscicola CCAC 0214	171,136,975	24,093	Cheng S et al., 2019
11	Klebsormidium nitens NIES-2285 v1.1	103,921,766	15,568	Hori K et al., 2014
12	Astrephomene gubernaculifera NIES-4017	103,829,650	13,067	Yamashita S et al., 2021
13	Chlamydomonas reinhardtii CC-4532 v6.1	114,035,500	16,090	Craig RJ et al., 2023
14	Mayamaea pseudoterrestris NIES-4280	30,627,229	10,680	Suzuki S et al., 2022
15	Fragilaria crotonensis SAG 28.96	61,849,504	18,721	Zepernick BN et al., 2022
16	Chaetoceros tenuissimus NIES-3715	41,001,288	17,253	Hongo Y et al., 2021
17	Ostreobium queketti SAG 6.99	151,902,089	9,649	Iha Cintia et al., 2021
18	Nannochloropsis gaditana CCMP1894	30,865,741	8,928	Schwartz AS et al., 2018
19	Nitzschia putrida NIES-4239	34,998,307	13,794	Kamikawa R et al., 2022
20	Alaria esculenta A1	487,803,962	18,078	Bringloe TT et al., 2022
21	Nannochloris desiccata UTEX 2526	21,550,525	8,818	Sanders CK et al., 2022
22	Helicosporidium sp. ATCC 50920	12,373,820	5,602	Pombert JF et al., 2014
23	Nannochloris desiccata UTEX 2437	20,738,005	7,973	Sanders CK et al., 2022
24	Monodopsis strain C73	59,696,957	12,958	Yang HP et al., 2021
25	Monodopsis strain C141	60,466,283	12,961	Yang HP et al., 2021
26	Vischeria strain C74	106,485,303	15,625	Yang HP et al., 2021
27	Macrocystis pyrifera CI_03 v1.0	537,452,659	25,919
28	Pedinomonas minor SAG 1965-3	54,966,539	10,504	Xu Y et al., 2022
29	Pedinophyceae sp. YPF-701	27,899,919	7,759	Repetti SI et al., 2022
30	Zygnema circumcarinatum UTEX 1559	71,310,527	12,038	Feng Xuehuan et al., 2023
31	Zygnema cf. cylindricum SAG 698-1a	359,785,760	14,200	Feng Xuehuan et al., 2023
32	Zygnema circumcarinatum UTEX 1560	67,280,745	12,436	Feng Xuehuan et al., 2023
33	Scenedesmus obliquus UTEX 3031	205,013,584	13,349
34	Coccomyxa subellipsoidea C-169 v3.0	48,852,666	10,893	Blanc G et al., 2012
35	Porphyridium purpureum CCMP1328	22,192,338	8,278	Bhattacharya D et al., 2013
36	Microglena sp. YARC	572,689,865	19,590	Ye N et al., 2022
37	Micromonas sp. AD1 metagenome extracted assembly	21,112,593	11,269	Duncan A et al., 2022
38	Mesotaenium kramstae Lemmermann NIES-657 v3.0	331,691,281	15,982
39	Scenedesmus obliquus UTEX 393 v2.0	107,859,680	19,017
40	Cafeteria roenbergensis BVI	36,283,887	8,555	Hackl T et al., 2020
41	Chlamydomonas priscuii UWO241	211,641,456	14,754	Stahl-Rommel S et al., 2022
42	Monoraphidium minutum 26B-AM v1.0	68,170,630	15,337	Calhoun Sara et al., 2022
43	Enallax costatus CCAP 276/31 v1.1	127,564,975	19,308
44	Tetradesmus deserticola SNI-2 v1.1	198,160,740	17,197
45	Flechtneria rotunda SEV3VF49 v1.1	76,784,650	16,599
46	Tetradesmus obliquus UTEX 72 v1.1	107,156,682	16,985
47	Hyphochytrium catenoides ATCC 18719	68,540,538	18,481	Leonard G et al., 2018
48	Desmodesmus armatus UTEX B 2533 v2.0	122,633,162	15,634
49	Chromera velia CCMP2878	193,889,730	24,133	Woo YH et al., 2015
50	Labyrinthula sp. SR_Ha_C	50,948,119	8,488	Tan MH et al., 2021
51	Hondaea fermentalgiana CCAP_4062/3	38,943,350	11,853	Seddiki K et al., 2018
52	Nitzschia inconspicua GAI-293 v2.0	99,706,970	17,968	Oliver A et al., 2021
53	Tribonema minus UTEX B 3156 v1.0	158,345,074	18,290	Mahan KM et al., 2021
54	Hyaloperonospora arabidopsidis Emoy2 v2.0	78,897,814	9,138	Baxter L et al., 2010
55	Scenedesmus obliquus var. DOE0013 v1.0	102,771,905	15,938
56	Scenedesmus obliquus var. UTEX 1450 v1.0	104,043,312	16,565
57	Scenedesmus obliquus var. UTEX2630 v1.0	106,020,692	16,604
58	Cladocopium goreaui SCF055-01	1,027,792,016	35,913	Liu H et al., 2018
59	Breviolum minutum	609,476,485	47,014	Shoguchi E et al., 2013
60	Fugacium kawagutii CCMP2468	1,048,482,934	26,609	Lin S et al., 2015
61	Seminavis robusta D6	125,572,603	37,455	Osuna-Cruz CM et al., 2020
62	Chrysochromulina parva Lackey	65,764,750	28,185
63	Amoebophrya ceratii AT5.2	87,690,817	19,925	John U et al., 2019
64	Nemacystus decipiens Onna-1	153,973,811	17,099	Nishitsuji K et al., 2019
65	Nannochloropsis salina CCMP1776	27,757,252	8,927	Ohan JA et al., 2019
66	Fistulifera solaris JPCC DA0580	49,736,633	20,413	Tanaka T et al., 2015
67	Undaria pinnatifida M23	511,280,173	14,300	Shan T et al., 2020
68	Pyropia yezoensis U-51	43,483,963	10,327	Nakamura Y et al., 2013
69	Gracilariopsis chorda isolate SKKU-2015	92,180,038	10,806	Lee J et al., 2018
70	Chlamydomonas incerta SAG 7.73	129,236,421	16,957	Craig RJ et al., 2021
71	Chlamydomonas schloesseri CCAP 11/173	130,201,002	16,268	Craig RJ et al., 2021
72	Picocystis sp. ML	29,463,432	5,613	Junkins EN et al., 2019
73	Edaphochlamys debaryana CCAP 11/70	142,143,002	20,450	Craig RJ et al., 2021
74	Cladosiphon okamuranus S strain	169,730,755	14,750	Nishitsuji K et al., 2016
75	Galdieria sulphuraria Azora	14,055,766	6,305	Rossoni AW et al., 2019
76	Galdieria sulphuraria MtSh	14,998,623	6,160	Rossoni AW et al., 2019
77	Galdieria sulphuraria SAG 21.92	14,317,600	5,956	Rossoni AW et al., 2019
78	Galdieria sulphuraria MS1	14,906,717	7,441	Rossoni AW et al., 2019
79	Galdieria sulphuraria YNP5578.1	14,439,647	6,118	Rossoni AW et al., 2019
80	Galdieria sulphuraria 5572	14,288,869	6,472	Rossoni AW et al., 2019
81	Galdieria sulphuraria 002	14,106,382	5,912	Rossoni AW et al., 2019
82	Cyanidioschyzon merolae Soos	12,336,830	4,406	Rossoni AW et al., 2019
83	Galdieria sulphuraria RT22	15,626,563	6,982	Rossoni AW et al., 2019
84	Galdieria phlegrea Soos	14,871,243	6,125	Rossoni AW et al., 2019
85	Chlorella sorokiniana str. 1228	61,391,260	12,169	Hovde Blake T. et al., 2018
86	Chlorella sorokiniana UTEX 1602	59,371,605	10,384	Arriola MB et al., 2018
87	Botryococcus braunii Showa v2.1	170,200,492	23,685	Browne DR et al., 2017
88	Trebouxia sp. A1-2	52,896,788	13,918	Greshake Tzovaras B et al., 2020
89	Picochlorum renovo	14,391,424	9,010	Dahlin LR et al., 2019
90	Chlorella sp. A99	40,934,037	8,298	Hamada M et al., 2018
91	Auxenochlorella protothecoides UTEX 25	21,217,637	6,041	Vogler Brian W. et al., 2018
92	Chlorella sorokiniana DOE1412	57,881,618	12,611	Hovde Blake T. et al., 2018
93	Tetrabaena socialis NIES-571	135,779,852	14,296	Featherston J et al., 2018
94	Chlamydomonas eustigma NIES-2499	66,605,202	14,061	Hirooka S et al., 2017
95	Chlorella sorokiniana UTEX 1230	58,534,920	12,871	Hovde Blake T. et al., 2018
96	Picochlorum soloecismus DOE101	15,252,578	6,861	Gonzalez-Esquer CR et al., 2018
97	Cyanophora paradoxa CCMP329	98,351,904	25,518	Price DC et al., 2019
98	Prasinoderma coloniale CCMP1413	25,323,194	7,139	Li L et al., 2020
99	Tetraselmis striata	232,085,675	46,696	Steadman Tyler CR et al., 2019
100	Chara braunii S276	1,750,992,823	35,672	Nishiyama T et al., 2018
101	Ulva mutabilis Foyn	98,484,689	12,920	De Clerck O et al., 2018
102	Micractinium conductrix SAG 241.80	60,773,875	10,070	Arriola MB et al., 2018
103	Vitrella brassicaformis CCMP3155	72,700,666	21,239	Woo YH et al., 2015
104	Ochromonas sp. CCMP1393 v1.4	56,491,843	19,714
105	Paraphysomonas imperforata CCMP1604 v1.4	67,191,102	17,134
106	Minidiscus variabilis CCMP495 v1.0	76,188,022	25,179
107	Scenedesmus sp. NREL 46B-D3 v1.0	151,896,789	17,399	Calhoun S et al., 2021
108	Chloropicon primus CCMP1205	17,400,691	8,327	Lemieux C et al., 2019
109	Caulerpa lentillifera	28,654,260	8,818	Arimoto A et al., 2019
110	Volvox carteri v2.1	131,163,211	13,076	Prochnik SE et al., 2010
111	Chlamydomonas reinhardtii CC-503 v5.6	111,100,715	16,403	Merchant SS et al., 2007
112	Scenedesmus obliquus UTEX 393	107,715,903	16,779	Carreres B. M. et al., 2017
113	Scenedesmus obliquus EN0004 v1.0	100,077,845	15,053
114	Raphidocelis subcapitata NIES-35	51,162,697	13,383	Suzuki S et al., 2018
115	Reticulomyxa filosa	101,867,045	39,963	Glöckner G et al., 2014
116	Toxoplasma gondii ME49	65,668,120	8,318	Kissinger JC et al., 2003
117	Oxytricha trifallax JRB310	67,158,112	24,578	Swart EC et al., 2013
118	Tetrahymena thermophila SB210	103,014,375	26,994	Eisen JA et al., 2006
119	Plasmodium falciparum 3D7	23,326,872	5,392	Gardner MJ et al., 2002
120	Paramecium tetraurelia d4_2	72,094,543	39,580	Aury JM et al., 2006
121	Trichomonas vaginalis G3	176,420,065	59,679	Carlton JM et al., 2007
122	Trypanosoma brucei brucei TREU927	26,075,494	8,787	Berriman M et al., 2005
123	Giardia intestinalis ATCC 50803	11,213,615	6,502	Morrison HG et al., 2007
124	Phaeocystis globosa Pg-G v2.3	155,849,266	30,220
125	Phaeocystis antarctica CCMP1374 v2.2	198,936,094	37,754
126	Chromochloris zofingiensis SAG 211-14 v5.0	60,130,699	15,274	Roth MS et al., 2017
127	Chondrus crispus Stackhouse	104,980,420	9,808	Collén J et al., 2013
128	Cyanidioschyzon merolae strain 10D	16,546,747	4,803	Nozaki H et al., 2007
129	Galdieria sulphuraria 074W	13,712,004	7,174	Schönknecht G et al., 2013
130	Symbiodinium microadriaticum CCMP2467	808,226,712	43,403	Aranda M et al., 2016
131	Chrysochromulina tobin CCMP291	59,073,094	16,770	Hovde BT et al., 2015
132	Nannochloropsis oceanica CCMP1779 v2.0	36,454,932	10,641
133	Symbiochloris reticulata Africa extracted metagenome v1.0	58,569,719	12,720
134	Symbiochloris reticulata Scotland extracted metagenome v1.0	59,360,525	12,315
135	Symbiochloris reticulata Switzerland extracted metagenome v1.0	59,348,134	12,701
136	Symbiochloris reticulata Spain extracted metagenome v1.0	56,841,181	12,144
137	Porphyra umbilicalis isolate 4086291	87,888,981	13,567	Brawley SH et al., 2017
138	Nannochloropsis gaditana B-31	27,589,342	10,929	Corteggiani Carpinelli E et al., 2014
139	Blastocystis hominis Singapore isolate B (sub-type 7)	18,817,245	6,020	Denoeud F et al., 2011
140	Saprolegnia parasitica CBS 223.65	53,093,248	20,113	Jiang RH et al., 2013
141	Phytophthora infestans T30-4	228,543,505	17,797	Haas BJ et al., 2009
142	Thalassiosira oceanica CCMP1005	92,185,637	34,642	Lommer M et al., 2012
143	Ectocarpus siliculosus Ec 32	195,810,619	16,271	Cock JM et al., 2010
144	Auxenochlorella protothecoides 0710	22,924,637	7,013	Gao C et al., 2014
145	Sorghum bicolor	738,540,932	35,899	Paterson AH et al., 2009
146	Ostreococcus tauri RCC1115 v1.0	14,904,543	8,218	Blanc-Mathieu R et al., 2017
147	Ostreococcus tauri RCC4221 v3.0	12,916,858	7,669	Blanc-Mathieu R et al., 2014
148	Cryptophyceae sp. CCMP2293 v1.0	534,466,773	33,051	Dorrell RG et al., 2023
149	Pavlovales sp. CCMP2436 v1.0	165,407,586	26,034	Dorrell RG et al., 2023
150	Pelagophyceae sp. CCMP2097 v1.0	85,824,453	19,402	Dorrell RG et al., 2023
151	Ochromonadaceae sp. CCMP2298 v1.0	61,140,752	20,195	Dorrell RG et al., 2023
152	Symbiochloris reticulata Spain reference genome v1.0	58,316,282	12,582
153	Micromonas commoda NOUM17 (RCC 299)	20,989,326	10,262	Worden AZ et al., 2009
154	Micromonas pusilla CCMP1545	21,945,545	9,829	Worden AZ et al., 2009
155	Asterochloris glomerata Cgr/DA1pho v2.0	55,816,160	10,025	Armaleo D et al., 2019
156	Emiliania huxleyi CCMP1516 v1.0	167,727,055	33,341	Read BA et al., 2013
157	Naegleria gruberi v1.0	40,964,085	15,763	Fritz-Laylin LK et al., 2010
158	Phytophthora sojae v3.0	82,601,618	26,584	Tyler BM et al., 2006
159	Phytophthora ramorum v1.1	66,652,401	15,743	Tyler BM et al., 2006
160	Aureococcus anophagefferens clone 1984 v1.0	56,660,578	11,501	Gobler CJ et al., 2011
161	Phaeodactylum tricornutum	1,311,968	377	Bowler C et al., 2008
162	Chlorella variabilis NC64A v1.0	46,159,515	9,791	Blanc G et al., 2010
163	Selaginella moellendorffii v1.0		22,285	Banks JA et al., 2011
164	Ostreococcus lucimarinus	13,204,888		Palenik B et al., 2007
165	Ostreococcus sp. RCC809	13,296,292	3,174
166	Physcomitrium patens v1.1	479,985,347	35,938	Rensing SA et al., 2008
167	Arabidopsis lyrata	206,667,935		Hu TT et al., 2011
168	Schizochytrium aggregatum ATCC 28209 v1.0	40,854,260	10,612
169	Aplanochytrium kerguelense PBS07 v1.0	35,774,161	11,892
170	Aurantiochytrium limacinum ATCC MYA-1381 v1.0	60,926,267	14,859
171	Phytophthora cinnamomi var cinnamomi v1.0	77,967,402	26,131
172	Pseudo-nitzschia multiseries CLN-47	218,730,801	19,703
173	Bigelowiella natans CCMP2755 v1.0	94,701,163	21,708	Curtis BA et al., 2012
174	Guillardia theta CCMP2712 v1.0	87,159,915	24,840	Curtis BA et al., 2012
175	Phytophthora capsici LT1534 v11.0	64,023,748	19,805	Lamour KH et al., 2012
176	Fragilariopsis cylindrus CCMP 1102	80,540,407	21,066	Mock T et al., 2017
177	Thalassiosira pseudonana CCMP 1335	1,135,583	386	Bowler C et al., 2008
178	Phaeodactylum tricornutum CCAP 1055/1 v2.0	26,138,756	10,025	Bowler C et al., 2008
179	Thalassiosira pseudonana CCMP 1335 v3.0	31,301,782	11,390	Armbrust EV et al., 2004
180	Diacronema lutheri NIVA-4/92	43,502,671	13,777	Hulatt CJ et al., 2021
181	Saccharina japonica str. Ja	548,536,073	18,732	Ye N et al., 2015
182	Monoraphidium neglectum SAG 48.87	69,711,829	16,755	Bogen C et al., 2013
183	Zygnema circumcarinatum SAG 698-1b	70,999,792	10,678	Feng Xuehuan et al., 2023
184	Bathycoccus prasinos RCC1105	15,074,320	7,900	Moreau H et al., 2012
185	Gonium pectorale NIES-2863	148,806,073	16,290	Hanschen ER et al., 2016
186	Dunaliella salina CCAP19/18	343,704,392	18,801	Polle Juergen E. W. et al., 2017
187	Populus trichocarpa v1.1	485,510,911	45,555	Tuskan GA et al., 2006