Phycocosm Portals

159	Name	Assembly Length	# of Genes	Publication
1	Microglena sp. YARC	572,689,865	19,590	Ye N et al., 2022
2	Micromonas sp. AD1 metagenome extracted assembly	21,112,593	11,269	Duncan A et al., 2022
3	Mesotaenium kramstae Lemmermann NIES-657 v3.0	331,691,281	15,982
4	Scenedesmus obliquus UTEX 393 v2.0	107,859,680	19,017
5	Cafeteria roenbergensis BVI	36,283,887	8,555	Hackl T et al., 2020
6	Chlamydomonas priscuii UWO241	211,641,456	14,754	Stahl-Rommel S et al., 2022
7	Monoraphidium minutum 26B-AM v1.0	68,170,630	15,337	Calhoun Sara et al., 2022
8	Enallax costatus CCAP 276/31 v1.1	127,564,975	19,308
9	Tetradesmus deserticola SNI-2 v1.1	198,160,740	17,197
10	Flechtneria rotunda SEV3VF49 v1.1	76,784,650	16,599
11	Tetradesmus obliquus UTEX 72 v1.1	107,156,682	16,985
12	Hyphochytrium catenoides ATCC 18719	68,540,538	18,481	Leonard G et al., 2018
13	Spirogloea muscicola CCAC 0214	171,136,975	27,137	Cheng S et al., 2019
14	Desmodesmus armatus UTEX B 2533 v2.0	122,633,162	15,634
15	Chromera velia CCMP2878	193,889,730	24,133	Woo YH et al., 2015
16	Labyrinthula sp. SR_Ha_C	50,948,119	8,488	Tan MH et al., 2021
17	Hondaea fermentalgiana CCAP_4062/3	38,943,350	11,853	Seddiki K et al., 2018
18	Nitzschia inconspicua GAI-293 v2.0	99,706,970	17,968	Oliver A et al., 2021
19	Tribonema minus UTEX B 3156 v1.0	158,345,074	18,290	Mahan KM et al., 2021
20	Hyaloperonospora arabidopsidis Emoy2 v2.0	78,897,814	9,138	Baxter L et al., 2010
21	Scenedesmus obliquus var. DOE0013 v1.0	102,771,905	15,938
22	Scenedesmus obliquus var. UTEX 1450 v1.0	104,043,312	16,565
23	Scenedesmus obliquus var. UTEX2630 v1.0	106,020,692	16,604
24	Cladocopium goreaui SCF055-01	1,027,792,016	35,913	Liu H et al., 2018
25	Breviolum minutum	609,476,485	47,014	Shoguchi E et al., 2013
26	Fugacium kawagutii CCMP2468	1,048,482,934	26,609	Lin S et al., 2015
27	Seminavis robusta D6	125,572,603	37,455	Osuna-Cruz CM et al., 2020
28	Chrysochromulina parva Lackey	65,764,750	28,185
29	Amoebophrya ceratii AT5.2	87,690,817	19,925	John U et al., 2019
30	Nemacystus decipiens Onna-1	153,973,811	17,099	Nishitsuji K et al., 2019
31	Nannochloropsis salina CCMP1776	27,757,252	8,927	Ohan JA et al., 2019
32	Fistulifera solaris JPCC DA0580	49,736,633	20,413	Tanaka T et al., 2015
33	Cyclotella cryptica CCMP322	161,759,242	21,121	Traller JC et al., 2016
34	Undaria pinnatifida M23	511,280,173	14,300	Shan T et al., 2020
35	Pyropia yezoensis U-51	43,483,963	10,327	Nakamura Y et al., 2013
36	Gracilariopsis chorda isolate SKKU-2015	92,180,038	10,806	Lee J et al., 2018
37	Chlamydomonas incerta SAG 7.73	129,236,421	16,957	Craig RJ et al., 2021
38	Chlamydomonas schloesseri CCAP 11/173	130,201,002	16,268	Craig RJ et al., 2021
39	Picocystis sp. ML	29,463,432	5,613	Junkins EN et al., 2019
40	Edaphochlamys debaryana CCAP 11/70	142,143,002	20,450	Craig RJ et al., 2021
41	Cladosiphon okamuranus S strain	169,730,755	14,750	Nishitsuji K et al., 2016
42	Galdieria sulphuraria Azora	14,055,766	6,305	Rossoni AW et al., 2019
43	Galdieria sulphuraria MtSh	14,998,623	6,160	Rossoni AW et al., 2019
44	Galdieria sulphuraria SAG 21.92	14,317,600	5,956	Rossoni AW et al., 2019
45	Galdieria sulphuraria MS1	14,906,717	7,441	Rossoni AW et al., 2019
46	Galdieria sulphuraria YNP5578.1	14,439,647	6,118	Rossoni AW et al., 2019
47	Galdieria sulphuraria 5572	14,288,869	6,472	Rossoni AW et al., 2019
48	Galdieria sulphuraria 002	14,106,382	5,912	Rossoni AW et al., 2019
49	Cyanidioschyzon merolae Soos	12,336,830	4,406	Rossoni AW et al., 2019
50	Galdieria sulphuraria RT22	15,626,563	6,982	Rossoni AW et al., 2019
51	Galdieria phlegrea Soos	14,871,243	6,125	Rossoni AW et al., 2019
52	Chlorella sorokiniana str. 1228	61,391,260	12,169	Hovde Blake T. et al., 2018
53	Chlorella sorokiniana UTEX 1602	59,371,605	10,384	Arriola MB et al., 2018
54	Botryococcus braunii Showa v2.1	170,200,492	23,685	Browne DR et al., 2017
55	Trebouxia sp. A1-2	52,896,788	13,918	Greshake Tzovaras B et al., 2020
56	Picochlorum renovo	14,391,424	9,010	Dahlin LR et al., 2019
57	Chlorella sp. A99	40,934,037	8,298	Hamada M et al., 2018
58	Auxenochlorella protothecoides UTEX 25	21,217,637	6,041	Vogler Brian W. et al., 2018
59	Chlorella sorokiniana DOE1412	57,881,618	12,611	Hovde Blake T. et al., 2018
60	Tetrabaena socialis NIES-571	135,779,852	14,296	Featherston J et al., 2018
61	Chlamydomonas eustigma NIES-2499	66,605,202	14,061	Hirooka S et al., 2017
62	Chlorella sorokiniana UTEX 1230	58,534,920	12,871	Hovde Blake T. et al., 2018
63	Picochlorum soloecismus DOE101	15,252,578	6,861	Gonzalez-Esquer CR et al., 2018
64	Mesostigma viride NIES-296	441,698,809	29,795	Liang Z et al., 2020
65	Cyanophora paradoxa CCMP329	98,351,904	25,518	Price DC et al., 2019
66	Mesostigma viride CCAC 1140	281,412,241	9,300	Wang S et al., 2020
67	Chlorokybus atmophyticus CCAC 0220	74,335,726	9,300	Wang S et al., 2020
68	Prasinoderma coloniale CCMP1413	25,323,194	7,139	Li L et al., 2020
69	Mesotaenium endlicherianum SAG 12.97	173,768,482	11,080	Cheng S et al., 2019
70	Tetraselmis striata	232,085,675	46,696	Steadman Tyler CR et al., 2019
71	Chara braunii S276	1,750,992,823	35,672	Nishiyama T et al., 2018
72	Ulva mutabilis Foyn	98,484,689	12,920	De Clerck O et al., 2018
73	Micractinium conductrix SAG 241.80	60,773,875	10,070	Arriola MB et al., 2018
74	Vitrella brassicaformis CCMP3155	72,700,666	21,239	Woo YH et al., 2015
75	Ochromonas sp. CCMP1393 v1.4	56,491,843	19,714
76	Paraphysomonas imperforata CCMP1604 v1.4	67,191,102	17,134
77	Minidiscus variabilis CCMP495 v1.0	76,188,022	25,179
78	Scenedesmus sp. NREL 46B-D3 v1.0	151,896,789	17,399	Calhoun S et al., 2021
79	Scenedesmus obliquus UTEX B 3031	210,263,644	22,378	Starkenburg SR et al., 2017
80	Chloropicon primus CCMP1205	17,400,691	8,327	Lemieux C et al., 2019
81	Caulerpa lentillifera	28,654,260	8,818	Arimoto A et al., 2019
82	Volvox carteri v2.1	131,163,211	13,076	Prochnik SE et al., 2010
83	Chlamydomonas reinhardtii CC-503 v5.6	111,100,715	16,403	Merchant SS et al., 2007
84	Scenedesmus obliquus UTEX 393	107,715,903	16,779	Carreres B. M. et al., 2017
85	Scenedesmus obliquus EN0004 v1.0	100,077,845	15,053
86	Raphidocelis subcapitata NIES-35	51,162,697	13,383	Suzuki S et al., 2018
87	Reticulomyxa filosa	101,867,045	39,963	Glöckner G et al., 2014
88	Toxoplasma gondii ME49	65,668,120	8,318	Kissinger JC et al., 2003
89	Oxytricha trifallax JRB310	67,158,112	24,578	Swart EC et al., 2013
90	Tetrahymena thermophila SB210	103,014,375	26,994	Eisen JA et al., 2006
91	Plasmodium falciparum 3D7	23,326,872	5,392	Gardner MJ et al., 2002
92	Paramecium tetraurelia d4_2	72,094,543	39,580	Aury JM et al., 2006
93	Trichomonas vaginalis G3	176,420,065	59,679	Carlton JM et al., 2007
94	Trypanosoma brucei brucei TREU927	26,075,494	8,787	Berriman M et al., 2005
95	Giardia intestinalis ATCC 50803	11,213,615	6,502	Morrison HG et al., 2007
96	Phaeocystis globosa Pg-G v2.3	155,849,266	30,220
97	Phaeocystis antarctica CCMP1374 v2.2	198,936,094	37,754
98	Chromochloris zofingiensis SAG 211-14 v5.0	60,130,699	15,274	Roth MS et al., 2017
99	Chondrus crispus Stackhouse	104,980,420	9,808	Collén J et al., 2013
100	Cyanidioschyzon merolae strain 10D	16,546,747	4,803	Nozaki H et al., 2007
101	Galdieria sulphuraria 074W	13,712,004	7,174	Schönknecht G et al., 2013
102	Symbiodinium microadriaticum CCMP2467	808,226,712	43,403	Aranda M et al., 2016
103	Chrysochromulina tobin CCMP291	59,073,094	16,770	Hovde BT et al., 2015
104	Nannochloropsis oceanica CCMP1779 v2.0	36,454,932	10,641
105	Symbiochloris reticulata Africa extracted metagenome v1.0	58,569,719	12,720
106	Symbiochloris reticulata Scotland extracted metagenome v1.0	59,360,525	12,315
107	Symbiochloris reticulata Switzerland extracted metagenome v1.0	59,348,134	12,701
108	Symbiochloris reticulata Spain extracted metagenome v1.0	56,841,181	12,144
109	Porphyra umbilicalis isolate 4086291	87,888,981	13,567	Brawley SH et al., 2017
110	Nannochloropsis gaditana B-31	27,589,342	10,929	Corteggiani Carpinelli E et al., 2014
111	Blastocystis hominis Singapore isolate B (sub-type 7)	18,817,245	6,020	Denoeud F et al., 2011
112	Saprolegnia parasitica CBS 223.65	53,093,248	20,113	Jiang RH et al., 2013
113	Phytophthora infestans T30-4	228,543,505	17,797	Haas BJ et al., 2009
114	Thalassiosira oceanica CCMP1005	92,185,637	34,642	Lommer M et al., 2012
115	Ectocarpus siliculosus Ec 32	195,810,619	16,271	Cock JM et al., 2010
116	Auxenochlorella protothecoides 0710	22,924,637	7,013	Gao C et al., 2014
117	Sorghum bicolor	738,540,932	35,899	Paterson AH et al., 2009
118	Ostreococcus tauri RCC1115 v1.0	14,904,543	8,218	Blanc-Mathieu R et al., 2017
119	Ostreococcus tauri RCC4221 v3.0	12,916,858	7,669	Blanc-Mathieu R et al., 2014
120	Cryptophyceae sp. CCMP2293 v1.0	534,466,773	33,051
121	Pavlovales sp. CCMP2436 v1.0	165,407,586	26,034
122	Pelagophyceae sp. CCMP2097 v1.0	85,824,453	19,402
123	Ochromonadaceae sp. CCMP2298 v1.0	61,140,752	20,195
124	Symbiochloris reticulata Spain reference genome v1.0	58,316,282	12,582
125	Micromonas commoda NOUM17 (RCC 299)	20,989,326	10,262	Worden AZ et al., 2009
126	Micromonas pusilla CCMP1545	21,945,545	9,829	Worden AZ et al., 2009
127	Asterochloris glomerata Cgr/DA1pho v2.0	55,816,160	10,025	Armaleo D et al., 2019
128	Emiliania huxleyi CCMP1516 v1.0	167,727,055	33,341	Read BA et al., 2013
129	Phytophthora sojae v3.0	82,601,618	26,584	Tyler BM et al., 2006
130	Phytophthora ramorum v1.1	66,652,401	15,743	Tyler BM et al., 2006
131	Aureococcus anophagefferens clone 1984 v1.0	56,660,578	11,501	Gobler CJ et al., 2011
132	Naegleria gruberi v1.0	40,964,085	15,763	Fritz-Laylin LK et al., 2010
133	Phaeodactylum tricornutum	1,311,968	377	Bowler C et al., 2008
134	Chlorella variabilis NC64A v1.0	46,159,515	9,791	Blanc G et al., 2010
135	Selaginella moellendorffii v1.0		22,285	Banks JA et al., 2011
136	Ostreococcus lucimarinus	13,204,888		Palenik B et al., 2007
137	Ostreococcus sp. RCC809	13,296,292	3,174
138	Physcomitrium patens v1.1	479,985,347	35,938	Rensing SA et al., 2008
139	Arabidopsis lyrata	206,667,935		Hu TT et al., 2011
140	Schizochytrium aggregatum ATCC 28209 v1.0	40,854,260	10,612
141	Aplanochytrium kerguelense PBS07 v1.0	35,774,161	11,892
142	Aurantiochytrium limacinum ATCC MYA-1381 v1.0	60,926,267	14,859
143	Phytophthora cinnamomi var cinnamomi v1.0	77,967,402	26,131
144	Pseudo-nitzschia multiseries CLN-47	218,730,801	19,703
145	Bigelowiella natans CCMP2755 v1.0	94,701,163	21,708	Curtis BA et al., 2012
146	Guillardia theta CCMP2712 v1.0	87,159,915	24,840	Curtis BA et al., 2012
147	Phytophthora capsici LT1534 v11.0	64,023,748	19,805	Lamour KH et al., 2012
148	Coccomyxa subellipsoidea C-169 v2.0	48,952,548	9,851	Blanc G et al., 2012
149	Fragilariopsis cylindrus CCMP 1102	80,540,407	21,066	Mock T et al., 2017
150	Thalassiosira pseudonana CCMP 1335	1,135,583	386	Bowler C et al., 2008
151	Phaeodactylum tricornutum CCAP 1055/1 v2.0	26,138,756	10,025	Bowler C et al., 2008
152	Thalassiosira pseudonana CCMP 1335 v3.0	31,301,782	11,390	Armbrust EV et al., 2004
153	Saccharina japonica str. Ja	548,536,073	18,732	Ye N et al., 2015
154	Klebsormidium nitens NIES-2285	103,921,766	16,132	Hori K et al., 2014
155	Monoraphidium neglectum SAG 48.87	69,711,829	16,755	Bogen C et al., 2013
156	Bathycoccus prasinos RCC1105	15,074,320	7,900	Moreau H et al., 2012
157	Gonium pectorale NIES-2863	148,806,073	16,290	Hanschen ER et al., 2016
158	Dunaliella salina CCAP19/18	343,704,392	18,801	Polle Juergen E. W. et al., 2017
159	Populus trichocarpa v1.1	485,510,911	45,555	Tuskan GA et al., 2006