Phycocosm Portals

133	Name	Assembly Length	# of Genes	Publication
1	Cladocopium goreaui SCF055-01	1,027,792,016	35,913	Liu H et al., N/D
2	Breviolum minutum	609,476,485	47,014	Shoguchi E et al., 2013
3	Fugacium kawagutii CCMP2468	1,048,482,934	26,609	Lin S et al., 2015
4	Seminavis robusta D6	125,572,603	37,455	Osuna-Cruz CM et al., 2020
5	Chrysochromulina parva Lackey	65,764,750	28,185
6	Amoebophrya ceratii AT5.2	87,690,817	19,925	John U et al., 2019
7	Fistulifera solaris JPCC DA0580	49,736,633	20,413	Tanaka T et al., 2015
8	Nemacystus decipiens Onna-1	153,973,811	17,099	Nishitsuji K et al., 2019
9	Cyclotella cryptica CCMP322	161,759,242	21,121	Traller JC et al., N/D
10	Undaria pinnatifida M23	511,280,173	14,300	Shan T et al., N/D
11	Nannochloropsis salina CCMP1776	27,757,252	8,927	Ohan JA et al., 2019
12	Gracilariopsis chorda isolate SKKU-2015	92,180,038	10,806	Lee J et al., 2018
13	Pyropia yezoensis U-51	43,483,963	10,327	Nakamura Y et al., N/D
14	Edaphochlamys debaryana CCAP 11/70	142,143,002	20,450
15	Chlamydomonas incerta SAG 7.73	129,236,421	16,957
16	Chlamydomonas schloesseri CCAP 11/173	130,201,002	16,268
17	Picocystis sp. ML	29,463,432	5,613	Junkins EN et al., 2019
18	Cladosiphon okamuranus S strain	169,730,755	14,750	Nishitsuji K et al., 2016
19	Galdieria sulphuraria MS1	14,906,717	7,441	Rossoni AW et al., 2019
20	Galdieria sulphuraria YNP5578.1	14,439,647	6,118	Rossoni AW et al., 2019
21	Galdieria sulphuraria Azora	14,055,766	6,305	Rossoni AW et al., 2019
22	Galdieria sulphuraria MtSh	14,998,623	6,160	Rossoni AW et al., 2019
23	Galdieria sulphuraria 5572	14,288,869	6,472	Rossoni AW et al., 2019
24	Galdieria sulphuraria 002	14,106,382	5,912	Rossoni AW et al., 2019
25	Galdieria sulphuraria SAG 21.92	14,317,600	5,956	Rossoni AW et al., 2019
26	Cyanidioschyzon merolae Soos	12,336,830	4,406	Rossoni AW et al., 2019
27	Galdieria sulphuraria RT22	15,626,563	6,982	Rossoni AW et al., 2019
28	Galdieria phelgrea Soos	14,871,243	6,125	Rossoni AW et al., 2019
29	Chlorella sorokiniana str. 1228	61,391,260	12,169
30	Chlorella sorokiniana UTEX 1602	59,371,605	10,384	Arriola MB et al., 2018
31	Botryococcus braunii Showa v2.1	170,200,492	23,685	Browne DR et al., 2017
32	Trebouxia sp. A1-2	52,896,788	13,918	Greshake Tzovaras B et al., 2020
33	Chlorella sorokiniana DOE1412	57,881,618	12,611
34	Picochlorum renovo	14,391,424	9,010	Dahlin LR et al., N/D
35	Chlorella sp. A99	40,934,037	8,298	Hamada M et al., 2018
36	Auxenochlorella protothecoides UTEX 25	21,217,637	6,041
37	Tetrabaena socialis NIES-571	135,779,852	14,296	Featherston J et al., 2018
38	Chlamydomonas eustigma NIES-2499	66,605,202	14,061	Hirooka S et al., 2017
39	Chlorella sorokiniana UTEX 1230	58,534,920	12,871
40	Picochlorum soloecismus DOE101	15,252,578	6,861	Gonzalez-Esquer CR et al., 2018
41	Mesostigma viride NIES-296	441,698,809	29,795	Liang Z et al., 2020
42	Cyanophora paradoxa CCMP329	98,351,904	25,518	Price DC et al., 2019
43	Mesostigma viride CCAC 1140	281,412,241	9,300	Wang S et al., 2020
44	Chlorokybus atmophyticus CCAC 0220	74,335,726	9,300	Wang S et al., 2020
45	Prasinoderma coloniale CCMP1413	25,323,194	7,139	Li L et al., 2020
46	Mesotaenium endlicherianum SAG 12.97	173,768,482	11,080	Cheng S et al., 2019
47	Tetraselmis striata	232,085,675	46,696	Steadman Tyler CR et al., 2019
48	Chara braunii S276	1,750,992,823	35,672	Nishiyama T et al., 2018
49	Ulva mutabilis Føyn	98,484,689	12,920	De Clerck O et al., 2018
50	Micractinium conductrix SAG 241.80	60,773,875	10,070	Arriola MB et al., 2018
51	Vitrella brassicaformis CCMP3155	72,700,666	21,239	Woo YH et al., 2015
52	Minidiscus variabilis CCMP495 v1.0	76,188,022	25,179
53	Ochromonas sp. CCMP1393 v1.4	56,491,843	19,714
54	Paraphysomonas imperforata CCMP1604 v1.4	67,191,102	17,134
55	Scenedesmus sp. NREL 46B-D3 v1.0	151,896,789	17,399
56	Scenedesmus obliquus UTEX B 3031	210,263,644	22,378
57	Chloropicon primus CCMP1205	17,400,691	8,327	Lemieux C et al., 2019
58	Caulerpa lentillifera	28,654,260	8,818	Arimoto A et al., 2019
59	Volvox carteri v2.1	131,163,211	13,076	Prochnik SE et al., 2010
60	Chlamydomonas reinhardtii v5.6	111,100,715	16,403	Merchant SS et al., 2007
61	Scenedesmus obliquus UTEX 393	107,715,903	16,779	Carreres BM et al., 2017
62	Scenedesmus obliquus EN0004 v1.0	100,077,845	15,053
63	Raphidocelis subcapitata NIES-35	51,162,697	13,383	Suzuki S et al., 2018
64	Reticulomyxa filosa	101,867,045	39,963	Glöckner G et al., 2014
65	Tetrahymena thermophila SB210	103,014,375	26,994	Eisen JA et al., 2006
66	Toxoplasma gondii ME49	65,668,120	8,318	Kissinger JC et al., 2003
67	Plasmodium falciparum 3D7	23,326,872	5,392	Gardner MJ et al., 2002
68	Paramecium tetraurelia d4_2	72,094,543	39,580	Aury JM et al., 2006
69	Oxytricha trifallax JRB310	67,158,112	24,578	Swart EC et al., N/D
70	Trichomonas vaginalis G3	176,420,065	59,679	Carlton JM et al., 2007
71	Trypanosoma brucei brucei TREU927	26,075,494	8,787	Berriman M et al., 2005
72	Giardia intestinalis ATCC 50803	11,213,615	6,502	Morrison HG et al., 2007
73	Phaeocystis globosa Pg-G v2.3	155,849,266	30,220
74	Phaeocystis antarctica CCMP1374 v2.2	198,936,094	37,754
75	Chromochloris zofingiensis SAG 211-14	60,130,699	15,274	Roth MS et al., 2017
76	Cyanidioschyzon merolae strain 10D	16,546,747	4,803	Nozaki H et al., 2007
77	Chondrus crispus Stackhouse	104,980,420	9,808	Collén J et al., 2013
78	Galdieria sulphuraria 074W	13,712,004	7,174	Schönknecht G et al., 2013
79	Symbiodinium microadriaticum CCMP2467	808,226,712	43,403	Aranda M et al., 2016
80	Chrysochromulina tobin CCMP291	59,073,094	16,770	Hovde BT et al., N/D
81	Nannochloropsis oceanica CCMP1779 v2.0	36,454,932	10,641
82	Symbiochloris reticulata Africa extracted metagenome v1.0	58,569,719	12,720
83	Symbiochloris reticulata Switzerland extracted metagenome v1.0	59,348,134	12,701
84	Symbiochloris reticulata Scotland extracted metagenome v1.0	59,360,525	12,315
85	Symbiochloris reticulata Spain extracted metagenome v1.0	56,841,181	12,144
86	Porphyra umbilicalis isolate 4086291	87,888,981	13,567	Brawley SH et al., 2017
87	Nannochloropsis gaditana B-31	27,589,342	10,929	Corteggiani Carpinelli E et al., 2014
88	Phytophthora infestans T30-4	228,543,505	17,797	Haas BJ et al., 2009
89	Blastocystis hominis Singapore isolate B (sub-type 7)	18,817,245	6,020	Denoeud F et al., N/D
90	Saprolegnia parasitica CBS 223.65	53,093,248	20,113	Jiang RH et al., 2013
91	Ectocarpus siliculosus Ec 32	195,810,619	16,271	Cock JM et al., 2010
92	Thalassiosira oceanica CCMP1005	92,185,637	34,642	Lommer M et al., 2012
93	Auxenochlorella protothecoides 0710	22,924,637	7,013	Gao C et al., 2014
94	Sorghum bicolor	738,540,932	35,899	Paterson AH et al., 2009
95	Ostreococcus tauri RCC4221 v3.0	12,916,858	7,669	Blanc-Mathieu R et al., 2014
96	Ostreococcus tauri RCC1115 v1.0	14,904,543	8,218	Blanc-Mathieu R et al., 2017
97	Cryptophyceae sp. CCMP2293 v1.0	534,466,773	33,051
98	Pavlovales sp. CCMP2436 v1.0	165,407,586	26,034
99	Pelagophyceae sp. CCMP2097 v1.0	85,824,453	19,402
100	Ochromonadaceae sp. CCMP2298 v1.0	61,140,752	20,195
101	Symbiochloris reticulata Spain reference genome v1.0	58,316,282	12,582
102	Micromonas commoda NOUM17 (RCC 299)	20,989,326	10,262	Worden AZ et al., 2009
103	Micromonas pusilla CCMP1545	21,945,545	9,829	Worden AZ et al., 2009
104	Asterochloris glomerata Cgr/DA1pho v2.0	55,816,160	10,025	Armaleo D et al., 2019
105	Emiliania huxleyi CCMP1516 v1.0	167,727,055	33,341	Read BA et al., 2013
106	Phytophthora ramorum v1.1	66,652,401	15,743	Tyler BM et al., 2006
107	Phytophthora sojae v3.0	82,601,618	26,584	Tyler BM et al., 2006
108	Aureococcus anophagefferens clone 1984	56,660,578	11,501	Gobler CJ et al., 2011
109	Naegleria gruberi v1.0	40,964,085	15,763	Fritz-Laylin LK et al., 2010
110	Chlorella variabilis NC64A	46,159,515	9,791	Blanc G et al., 2010
111	Selaginella moellendorffii v1.0		22,285	Banks JA et al., 2011
112	Ostreococcus lucimarinus	13,204,888		Palenik B et al., 2007
113	Ostreococcus sp. RCC809	13,296,292	3,174
114	Physcomitrella patens subsp patens v1.1	479,985,347	35,938	Rensing SA et al., 2008
115	Arabidopsis lyrata	206,667,935		Hu TT et al., 2011
116	Schizochytrium aggregatum ATCC 28209	40,854,260	10,612
117	Aplanochytrium kerguelense PBS07 v1.0	35,774,161	11,892
118	Aurantiochytrium limacinum ATCC MYA-1381	60,926,267	14,859
119	Phytophthora cinnamomi var cinnamomi v1.0	77,967,402	26,131
120	Pseudo-nitzschia multiseries CLN-47	218,730,801	19,703
121	Guillardia theta CCMP2712	87,159,915	24,840	Curtis BA et al., 2012
122	Bigelowiella natans CCMP2755	94,701,163	21,708	Curtis BA et al., 2012
123	Phytophthora capsici LT1534 v11.0	64,023,748	19,805	Lamour KH et al., 2012
124	Coccomyxa subellipsoidea C-169	48,952,548	9,851	Blanc G et al., 2012
125	Fragilariopsis cylindrus CCMP 1102	80,540,407	21,066	Mock T et al., 2017
126	Thalassiosira pseudonana CCMP 1335	31,301,782	11,390	Armbrust EV et al., 2004
127	Phaeodactylum tricornutum CCAP 1055/1 v2.0	26,138,756	10,025	Bowler C et al., 2008
128	Klebsormidium nitens NIES-2285	103,921,766	16,132	Hori K et al., 2014
129	Monoraphidium neglectum SAG 48.87	69,711,829	16,755	Bogen C et al., 2013
130	Bathycoccus prasinos RCC1105	15,074,320	7,900	Moreau H et al., 2012
131	Gonium pectorale NIES-2863	148,806,073	16,290	Hanschen ER et al., 2016
132	Dunaliella salina CCAP19/18	343,704,392	18,801	Polle JEW et al., 2017
133	Populus trichocarpa v1.1	485,510,911	45,555	Tuskan GA et al., 2006