Phycocosm Portals

149	Name	Assembly Length	# of Genes	Publication
1	Desmodesmus armatus UTEX B 2533 v2.0	122,633,162	15,634
2	Chromera velia CCMP2878	193,889,730	24,133	Woo YH et al., 2015
3	Labyrinthula sp. SR_Ha_C	50,948,119	8,488	Tan MH et al., 2021
4	Hondaea fermentalgiana CCAP_4062/3	38,943,350	11,853	Seddiki K et al., 2018
5	Nitzschia inconspicua GAI-293 v2.0	99,706,970	17,968	Oliver A et al., 2021
6	Tribonema minus UTEX B 3156 v1.0	158,345,074	18,290	Mahan KM et al., 2021
7	Hyaloperonospora arabidopsidis Emoy2 v2.0	78,897,814	9,138	Baxter L et al., 2010
8	Tetradesmus deserticola SNI-2 v1.0	198,160,740	18,507
9	Tetradesmus obliquus UTEX B 72 v1.0	107,156,682	17,693
10	Flechtneria rotunda SEV3-VF49 v1.0	76,784,650	16,799
11	Scenedesmus obliquus var. DOE0013 v1.0	102,771,905	15,938
12	Enallax costatus CCAP 276/31 v1.0	127,564,975	19,918
13	Scenedesmus obliquus var. UTEX 1450 v1.0	104,043,312	16,565
14	Scenedesmus obliquus var. UTEX2630 v1.0	106,020,692	16,604
15	Cladocopium goreaui SCF055-01	1,027,792,016	35,913	Liu H et al., N/D
16	Breviolum minutum	609,476,485	47,014	Shoguchi E et al., 2013
17	Fugacium kawagutii CCMP2468	1,048,482,934	26,609	Lin S et al., 2015
18	Seminavis robusta D6	125,572,603	37,455	Osuna-Cruz CM et al., 2020
19	Chrysochromulina parva Lackey	65,764,750	28,185
20	Amoebophrya ceratii AT5.2	87,690,817	19,925	John U et al., 2019
21	Nemacystus decipiens Onna-1	153,973,811	17,099	Nishitsuji K et al., 2019
22	Nannochloropsis salina CCMP1776	27,757,252	8,927	Ohan JA et al., 2019
23	Fistulifera solaris JPCC DA0580	49,736,633	20,413	Tanaka T et al., 2015
24	Cyclotella cryptica CCMP322	161,759,242	21,121	Traller JC et al., N/D
25	Undaria pinnatifida M23	511,280,173	14,300	Shan T et al., N/D
26	Pyropia yezoensis U-51	43,483,963	10,327	Nakamura Y et al., N/D
27	Gracilariopsis chorda isolate SKKU-2015	92,180,038	10,806	Lee J et al., 2018
28	Chlamydomonas incerta SAG 7.73	129,236,421	16,957
29	Chlamydomonas schloesseri CCAP 11/173	130,201,002	16,268
30	Picocystis sp. ML	29,463,432	5,613	Junkins EN et al., 2019
31	Edaphochlamys debaryana CCAP 11/70	142,143,002	20,450
32	Cladosiphon okamuranus S strain	169,730,755	14,750	Nishitsuji K et al., 2016
33	Galdieria sulphuraria Azora	14,055,766	6,305	Rossoni AW et al., 2019
34	Galdieria sulphuraria MtSh	14,998,623	6,160	Rossoni AW et al., 2019
35	Galdieria sulphuraria SAG 21.92	14,317,600	5,956	Rossoni AW et al., 2019
36	Galdieria sulphuraria MS1	14,906,717	7,441	Rossoni AW et al., 2019
37	Galdieria sulphuraria YNP5578.1	14,439,647	6,118	Rossoni AW et al., 2019
38	Galdieria sulphuraria 5572	14,288,869	6,472	Rossoni AW et al., 2019
39	Galdieria sulphuraria 002	14,106,382	5,912	Rossoni AW et al., 2019
40	Cyanidioschyzon merolae Soos	12,336,830	4,406	Rossoni AW et al., 2019
41	Galdieria sulphuraria RT22	15,626,563	6,982	Rossoni AW et al., 2019
42	Galdieria phelgrea Soos	14,871,243	6,125	Rossoni AW et al., 2019
43	Chlorella sorokiniana str. 1228	61,391,260	12,169
44	Chlorella sorokiniana UTEX 1602	59,371,605	10,384	Arriola MB et al., 2018
45	Botryococcus braunii Showa v2.1	170,200,492	23,685	Browne DR et al., 2017
46	Trebouxia sp. A1-2	52,896,788	13,918	Greshake Tzovaras B et al., 2020
47	Picochlorum renovo	14,391,424	9,010	Dahlin LR et al., N/D
48	Chlorella sp. A99	40,934,037	8,298	Hamada M et al., 2018
49	Auxenochlorella protothecoides UTEX 25	21,217,637	6,041
50	Chlorella sorokiniana DOE1412	57,881,618	12,611
51	Tetrabaena socialis NIES-571	135,779,852	14,296	Featherston J et al., 2018
52	Chlamydomonas eustigma NIES-2499	66,605,202	14,061	Hirooka S et al., 2017
53	Chlorella sorokiniana UTEX 1230	58,534,920	12,871
54	Picochlorum soloecismus DOE101	15,252,578	6,861	Gonzalez-Esquer CR et al., 2018
55	Mesostigma viride NIES-296	441,698,809	29,795	Liang Z et al., 2020
56	Cyanophora paradoxa CCMP329	98,351,904	25,518	Price DC et al., 2019
57	Mesostigma viride CCAC 1140	281,412,241	9,300	Wang S et al., 2020
58	Chlorokybus atmophyticus CCAC 0220	74,335,726	9,300	Wang S et al., 2020
59	Prasinoderma coloniale CCMP1413	25,323,194	7,139	Li L et al., 2020
60	Mesotaenium endlicherianum SAG 12.97	173,768,482	11,080	Cheng S et al., 2019
61	Tetraselmis striata	232,085,675	46,696	Steadman Tyler CR et al., 2019
62	Chara braunii S276	1,750,992,823	35,672	Nishiyama T et al., 2018
63	Ulva mutabilis Føyn	98,484,689	12,920	De Clerck O et al., 2018
64	Micractinium conductrix SAG 241.80	60,773,875	10,070	Arriola MB et al., 2018
65	Vitrella brassicaformis CCMP3155	72,700,666	21,239	Woo YH et al., 2015
66	Ochromonas sp. CCMP1393 v1.4	56,491,843	19,714
67	Paraphysomonas imperforata CCMP1604 v1.4	67,191,102	17,134
68	Minidiscus variabilis CCMP495 v1.0	76,188,022	25,179
69	Scenedesmus sp. NREL 46B-D3 v1.0	151,896,789	17,399	Calhoun S et al., 2021
70	Scenedesmus obliquus UTEX B 3031	210,263,644	22,378	Starkenburg SR et al., 2017
71	Chloropicon primus CCMP1205	17,400,691	8,327	Lemieux C et al., 2019
72	Caulerpa lentillifera	28,654,260	8,818	Arimoto A et al., 2019
73	Volvox carteri v2.1	131,163,211	13,076	Prochnik SE et al., 2010
74	Chlamydomonas reinhardtii v5.6	111,100,715	16,403	Merchant SS et al., 2007
75	Scenedesmus obliquus UTEX 393	107,715,903	16,779	Carreres BM et al., 2017
76	Scenedesmus obliquus EN0004 v1.0	100,077,845	15,053
77	Raphidocelis subcapitata NIES-35	51,162,697	13,383	Suzuki S et al., 2018
78	Reticulomyxa filosa	101,867,045	39,963	Glöckner G et al., 2014
79	Toxoplasma gondii ME49	65,668,120	8,318	Kissinger JC et al., 2003
80	Oxytricha trifallax JRB310	67,158,112	24,578	Swart EC et al., N/D
81	Tetrahymena thermophila SB210	103,014,375	26,994	Eisen JA et al., 2006
82	Plasmodium falciparum 3D7	23,326,872	5,392	Gardner MJ et al., 2002
83	Paramecium tetraurelia d4_2	72,094,543	39,580	Aury JM et al., 2006
84	Trichomonas vaginalis G3	176,420,065	59,679	Carlton JM et al., 2007
85	Trypanosoma brucei brucei TREU927	26,075,494	8,787	Berriman M et al., 2005
86	Giardia intestinalis ATCC 50803	11,213,615	6,502	Morrison HG et al., 2007
87	Phaeocystis globosa Pg-G v2.3	155,849,266	30,220
88	Phaeocystis antarctica CCMP1374 v2.2	198,936,094	37,754
89	Chromochloris zofingiensis SAG 211-14 v5.0	60,130,699	15,274	Roth MS et al., 2017
90	Chondrus crispus Stackhouse	104,980,420	9,808	Collén J et al., 2013
91	Cyanidioschyzon merolae strain 10D	16,546,747	4,803	Nozaki H et al., 2007
92	Galdieria sulphuraria 074W	13,712,004	7,174	Schönknecht G et al., 2013
93	Symbiodinium microadriaticum CCMP2467	808,226,712	43,403	Aranda M et al., 2016
94	Chrysochromulina tobin CCMP291	59,073,094	16,770	Hovde BT et al., N/D
95	Nannochloropsis oceanica CCMP1779 v2.0	36,454,932	10,641
96	Symbiochloris reticulata Africa extracted metagenome v1.0	58,569,719	12,720
97	Symbiochloris reticulata Scotland extracted metagenome v1.0	59,360,525	12,315
98	Symbiochloris reticulata Switzerland extracted metagenome v1.0	59,348,134	12,701
99	Symbiochloris reticulata Spain extracted metagenome v1.0	56,841,181	12,144
100	Porphyra umbilicalis isolate 4086291	87,888,981	13,567	Brawley SH et al., 2017
101	Nannochloropsis gaditana B-31	27,589,342	10,929	Corteggiani Carpinelli E et al., 2014
102	Blastocystis hominis Singapore isolate B (sub-type 7)	18,817,245	6,020	Denoeud F et al., N/D
103	Saprolegnia parasitica CBS 223.65	53,093,248	20,113	Jiang RH et al., 2013
104	Phytophthora infestans T30-4	228,543,505	17,797	Haas BJ et al., 2009
105	Thalassiosira oceanica CCMP1005	92,185,637	34,642	Lommer M et al., 2012
106	Ectocarpus siliculosus Ec 32	195,810,619	16,271	Cock JM et al., 2010
107	Auxenochlorella protothecoides 0710	22,924,637	7,013	Gao C et al., 2014
108	Sorghum bicolor	738,540,932	35,899	Paterson AH et al., 2009
109	Ostreococcus tauri RCC1115 v1.0	14,904,543	8,218	Blanc-Mathieu R et al., 2017
110	Ostreococcus tauri RCC4221 v3.0	12,916,858	7,669	Blanc-Mathieu R et al., 2014
111	Cryptophyceae sp. CCMP2293 v1.0	534,466,773	33,051
112	Pavlovales sp. CCMP2436 v1.0	165,407,586	26,034
113	Pelagophyceae sp. CCMP2097 v1.0	85,824,453	19,402
114	Ochromonadaceae sp. CCMP2298 v1.0	61,140,752	20,195
115	Symbiochloris reticulata Spain reference genome v1.0	58,316,282	12,582
116	Micromonas commoda NOUM17 (RCC 299)	20,989,326	10,262	Worden AZ et al., 2009
117	Micromonas pusilla CCMP1545	21,945,545	9,829	Worden AZ et al., 2009
118	Emiliania huxleyi
119	Asterochloris glomerata Cgr/DA1pho v2.0	55,816,160	10,025	Armaleo D et al., 2019
120	Emiliania huxleyi CCMP1516 v1.0	167,727,055	33,341	Read BA et al., 2013
121	Phytophthora sojae v3.0	82,601,618	26,584	Tyler BM et al., 2006
122	Phytophthora ramorum v1.1	66,652,401	15,743	Tyler BM et al., 2006
123	Aureococcus anophagefferens clone 1984	56,660,578	11,501	Gobler CJ et al., 2011
124	Naegleria gruberi v1.0	40,964,085	15,763	Fritz-Laylin LK et al., 2010
125	Chlorella variabilis NC64A	46,159,515	9,791	Blanc G et al., 2010
126	Selaginella moellendorffii v1.0		22,285	Banks JA et al., 2011
127	Ostreococcus lucimarinus	13,204,888		Palenik B et al., 2007
128	Ostreococcus sp. RCC809	13,296,292	3,174
129	Physcomitrella patens subsp patens v1.1	479,985,347	35,938	Rensing SA et al., 2008
130	Arabidopsis lyrata	206,667,935		Hu TT et al., 2011
131	Schizochytrium aggregatum ATCC 28209	40,854,260	10,612
132	Aplanochytrium kerguelense PBS07 v1.0	35,774,161	11,892
133	Aurantiochytrium limacinum ATCC MYA-1381	60,926,267	14,859
134	Phytophthora cinnamomi var cinnamomi v1.0	77,967,402	26,131
135	Pseudo-nitzschia multiseries CLN-47	218,730,801	19,703
136	Bigelowiella natans CCMP2755	94,701,163	21,708	Curtis BA et al., 2012
137	Guillardia theta CCMP2712	87,159,915	24,840	Curtis BA et al., 2012
138	Phytophthora capsici LT1534 v11.0	64,023,748	19,805	Lamour KH et al., 2012
139	Coccomyxa subellipsoidea C-169	48,952,548	9,851	Blanc G et al., 2012
140	Fragilariopsis cylindrus CCMP 1102	80,540,407	21,066	Mock T et al., 2017
141	Phaeodactylum tricornutum CCAP 1055/1 v2.0	26,138,756	10,025	Bowler C et al., 2008
142	Thalassiosira pseudonana CCMP 1335	31,301,782	11,390	Armbrust EV et al., 2004
143	Saccharina japonica str. Ja	548,536,073	18,732	Ye N et al., 2015
144	Klebsormidium nitens NIES-2285	103,921,766	16,132	Hori K et al., 2014
145	Monoraphidium neglectum SAG 48.87	69,711,829	16,755	Bogen C et al., 2013
146	Bathycoccus prasinos RCC1105	15,074,320	7,900	Moreau H et al., 2012
147	Gonium pectorale NIES-2863	148,806,073	16,290	Hanschen ER et al., 2016
148	Dunaliella salina CCAP19/18	343,704,392	18,801	Polle JEW et al., 2017
149	Populus trichocarpa v1.1	485,510,911	45,555	Tuskan GA et al., 2006