Phycocosm Portals

161	Name	Assembly Length	# of Genes	Publication
1	Scenedesmus obliquus UTEX 3031	205,013,584	13,349
2	Coccomyxa subellipsoidea C-169 v3.0	48,852,666	10,893	Blanc G et al., 2012
3	Porphyridium purpureum CCMP1328	22,192,338	8,278	Bhattacharya D et al., 2013
4	Microglena sp. YARC	572,689,865	19,590	Ye N et al., 2022
5	Micromonas sp. AD1 metagenome extracted assembly	21,112,593	11,269	Duncan A et al., 2022
6	Mesotaenium kramstae Lemmermann NIES-657 v3.0	331,691,281	15,982
7	Scenedesmus obliquus UTEX 393 v2.0	107,859,680	19,017
8	Cafeteria roenbergensis BVI	36,283,887	8,555	Hackl T et al., 2020
9	Chlamydomonas priscuii UWO241	211,641,456	14,754	Stahl-Rommel S et al., 2022
10	Monoraphidium minutum 26B-AM v1.0	68,170,630	15,337	Calhoun Sara et al., 2022
11	Enallax costatus CCAP 276/31 v1.1	127,564,975	19,308
12	Tetradesmus deserticola SNI-2 v1.1	198,160,740	17,197
13	Flechtneria rotunda SEV3VF49 v1.1	76,784,650	16,599
14	Tetradesmus obliquus UTEX 72 v1.1	107,156,682	16,985
15	Hyphochytrium catenoides ATCC 18719	68,540,538	18,481	Leonard G et al., 2018
16	Spirogloea muscicola CCAC 0214	171,136,975	27,137	Cheng S et al., 2019
17	Desmodesmus armatus UTEX B 2533 v2.0	122,633,162	15,634
18	Chromera velia CCMP2878	193,889,730	24,133	Woo YH et al., 2015
19	Labyrinthula sp. SR_Ha_C	50,948,119	8,488	Tan MH et al., 2021
20	Hondaea fermentalgiana CCAP_4062/3	38,943,350	11,853	Seddiki K et al., 2018
21	Nitzschia inconspicua GAI-293 v2.0	99,706,970	17,968	Oliver A et al., 2021
22	Tribonema minus UTEX B 3156 v1.0	158,345,074	18,290	Mahan KM et al., 2021
23	Hyaloperonospora arabidopsidis Emoy2 v2.0	78,897,814	9,138	Baxter L et al., 2010
24	Scenedesmus obliquus var. DOE0013 v1.0	102,771,905	15,938
25	Scenedesmus obliquus var. UTEX 1450 v1.0	104,043,312	16,565
26	Scenedesmus obliquus var. UTEX2630 v1.0	106,020,692	16,604
27	Cladocopium goreaui SCF055-01	1,027,792,016	35,913	Liu H et al., 2018
28	Breviolum minutum	609,476,485	47,014	Shoguchi E et al., 2013
29	Fugacium kawagutii CCMP2468	1,048,482,934	26,609	Lin S et al., 2015
30	Seminavis robusta D6	125,572,603	37,455	Osuna-Cruz CM et al., 2020
31	Chrysochromulina parva Lackey	65,764,750	28,185
32	Amoebophrya ceratii AT5.2	87,690,817	19,925	John U et al., 2019
33	Nemacystus decipiens Onna-1	153,973,811	17,099	Nishitsuji K et al., 2019
34	Nannochloropsis salina CCMP1776	27,757,252	8,927	Ohan JA et al., 2019
35	Fistulifera solaris JPCC DA0580	49,736,633	20,413	Tanaka T et al., 2015
36	Cyclotella cryptica CCMP322	161,759,242	21,121	Traller JC et al., 2016
37	Undaria pinnatifida M23	511,280,173	14,300	Shan T et al., 2020
38	Pyropia yezoensis U-51	43,483,963	10,327	Nakamura Y et al., 2013
39	Gracilariopsis chorda isolate SKKU-2015	92,180,038	10,806	Lee J et al., 2018
40	Chlamydomonas incerta SAG 7.73	129,236,421	16,957	Craig RJ et al., 2021
41	Chlamydomonas schloesseri CCAP 11/173	130,201,002	16,268	Craig RJ et al., 2021
42	Picocystis sp. ML	29,463,432	5,613	Junkins EN et al., 2019
43	Edaphochlamys debaryana CCAP 11/70	142,143,002	20,450	Craig RJ et al., 2021
44	Cladosiphon okamuranus S strain	169,730,755	14,750	Nishitsuji K et al., 2016
45	Galdieria sulphuraria Azora	14,055,766	6,305	Rossoni AW et al., 2019
46	Galdieria sulphuraria MtSh	14,998,623	6,160	Rossoni AW et al., 2019
47	Galdieria sulphuraria SAG 21.92	14,317,600	5,956	Rossoni AW et al., 2019
48	Galdieria sulphuraria MS1	14,906,717	7,441	Rossoni AW et al., 2019
49	Galdieria sulphuraria YNP5578.1	14,439,647	6,118	Rossoni AW et al., 2019
50	Galdieria sulphuraria 5572	14,288,869	6,472	Rossoni AW et al., 2019
51	Galdieria sulphuraria 002	14,106,382	5,912	Rossoni AW et al., 2019
52	Cyanidioschyzon merolae Soos	12,336,830	4,406	Rossoni AW et al., 2019
53	Galdieria sulphuraria RT22	15,626,563	6,982	Rossoni AW et al., 2019
54	Galdieria phlegrea Soos	14,871,243	6,125	Rossoni AW et al., 2019
55	Chlorella sorokiniana str. 1228	61,391,260	12,169	Hovde Blake T. et al., 2018
56	Chlorella sorokiniana UTEX 1602	59,371,605	10,384	Arriola MB et al., 2018
57	Botryococcus braunii Showa v2.1	170,200,492	23,685	Browne DR et al., 2017
58	Trebouxia sp. A1-2	52,896,788	13,918	Greshake Tzovaras B et al., 2020
59	Picochlorum renovo	14,391,424	9,010	Dahlin LR et al., 2019
60	Chlorella sp. A99	40,934,037	8,298	Hamada M et al., 2018
61	Auxenochlorella protothecoides UTEX 25	21,217,637	6,041	Vogler Brian W. et al., 2018
62	Chlorella sorokiniana DOE1412	57,881,618	12,611	Hovde Blake T. et al., 2018
63	Tetrabaena socialis NIES-571	135,779,852	14,296	Featherston J et al., 2018
64	Chlamydomonas eustigma NIES-2499	66,605,202	14,061	Hirooka S et al., 2017
65	Chlorella sorokiniana UTEX 1230	58,534,920	12,871	Hovde Blake T. et al., 2018
66	Picochlorum soloecismus DOE101	15,252,578	6,861	Gonzalez-Esquer CR et al., 2018
67	Mesostigma viride NIES-296	441,698,809	29,795	Liang Z et al., 2020
68	Cyanophora paradoxa CCMP329	98,351,904	25,518	Price DC et al., 2019
69	Mesostigma viride CCAC 1140	281,412,241	9,300	Wang S et al., 2020
70	Chlorokybus atmophyticus CCAC 0220	74,335,726	9,300	Wang S et al., 2020
71	Prasinoderma coloniale CCMP1413	25,323,194	7,139	Li L et al., 2020
72	Mesotaenium endlicherianum SAG 12.97	173,768,482	11,080	Cheng S et al., 2019
73	Tetraselmis striata	232,085,675	46,696	Steadman Tyler CR et al., 2019
74	Chara braunii S276	1,750,992,823	35,672	Nishiyama T et al., 2018
75	Ulva mutabilis Foyn	98,484,689	12,920	De Clerck O et al., 2018
76	Micractinium conductrix SAG 241.80	60,773,875	10,070	Arriola MB et al., 2018
77	Vitrella brassicaformis CCMP3155	72,700,666	21,239	Woo YH et al., 2015
78	Ochromonas sp. CCMP1393 v1.4	56,491,843	19,714
79	Paraphysomonas imperforata CCMP1604 v1.4	67,191,102	17,134
80	Minidiscus variabilis CCMP495 v1.0	76,188,022	25,179
81	Scenedesmus sp. NREL 46B-D3 v1.0	151,896,789	17,399	Calhoun S et al., 2021
82	Scenedesmus obliquus UTEX B 3031	210,263,644	22,378	Starkenburg SR et al., 2017
83	Chloropicon primus CCMP1205	17,400,691	8,327	Lemieux C et al., 2019
84	Caulerpa lentillifera	28,654,260	8,818	Arimoto A et al., 2019
85	Volvox carteri v2.1	131,163,211	13,076	Prochnik SE et al., 2010
86	Chlamydomonas reinhardtii CC-503 v5.6	111,100,715	16,403	Merchant SS et al., 2007
87	Scenedesmus obliquus UTEX 393	107,715,903	16,779	Carreres B. M. et al., 2017
88	Scenedesmus obliquus EN0004 v1.0	100,077,845	15,053
89	Raphidocelis subcapitata NIES-35	51,162,697	13,383	Suzuki S et al., 2018
90	Reticulomyxa filosa	101,867,045	39,963	Glöckner G et al., 2014
91	Toxoplasma gondii ME49	65,668,120	8,318	Kissinger JC et al., 2003
92	Oxytricha trifallax JRB310	67,158,112	24,578	Swart EC et al., 2013
93	Tetrahymena thermophila SB210	103,014,375	26,994	Eisen JA et al., 2006
94	Plasmodium falciparum 3D7	23,326,872	5,392	Gardner MJ et al., 2002
95	Paramecium tetraurelia d4_2	72,094,543	39,580	Aury JM et al., 2006
96	Trichomonas vaginalis G3	176,420,065	59,679	Carlton JM et al., 2007
97	Trypanosoma brucei brucei TREU927	26,075,494	8,787	Berriman M et al., 2005
98	Giardia intestinalis ATCC 50803	11,213,615	6,502	Morrison HG et al., 2007
99	Phaeocystis globosa Pg-G v2.3	155,849,266	30,220
100	Phaeocystis antarctica CCMP1374 v2.2	198,936,094	37,754
101	Chromochloris zofingiensis SAG 211-14 v5.0	60,130,699	15,274	Roth MS et al., 2017
102	Chondrus crispus Stackhouse	104,980,420	9,808	Collén J et al., 2013
103	Cyanidioschyzon merolae strain 10D	16,546,747	4,803	Nozaki H et al., 2007
104	Galdieria sulphuraria 074W	13,712,004	7,174	Schönknecht G et al., 2013
105	Symbiodinium microadriaticum CCMP2467	808,226,712	43,403	Aranda M et al., 2016
106	Chrysochromulina tobin CCMP291	59,073,094	16,770	Hovde BT et al., 2015
107	Nannochloropsis oceanica CCMP1779 v2.0	36,454,932	10,641
108	Symbiochloris reticulata Africa extracted metagenome v1.0	58,569,719	12,720
109	Symbiochloris reticulata Scotland extracted metagenome v1.0	59,360,525	12,315
110	Symbiochloris reticulata Switzerland extracted metagenome v1.0	59,348,134	12,701
111	Symbiochloris reticulata Spain extracted metagenome v1.0	56,841,181	12,144
112	Porphyra umbilicalis isolate 4086291	87,888,981	13,567	Brawley SH et al., 2017
113	Nannochloropsis gaditana B-31	27,589,342	10,929	Corteggiani Carpinelli E et al., 2014
114	Blastocystis hominis Singapore isolate B (sub-type 7)	18,817,245	6,020	Denoeud F et al., 2011
115	Saprolegnia parasitica CBS 223.65	53,093,248	20,113	Jiang RH et al., 2013
116	Phytophthora infestans T30-4	228,543,505	17,797	Haas BJ et al., 2009
117	Thalassiosira oceanica CCMP1005	92,185,637	34,642	Lommer M et al., 2012
118	Ectocarpus siliculosus Ec 32	195,810,619	16,271	Cock JM et al., 2010
119	Auxenochlorella protothecoides 0710	22,924,637	7,013	Gao C et al., 2014
120	Sorghum bicolor	738,540,932	35,899	Paterson AH et al., 2009
121	Ostreococcus tauri RCC1115 v1.0	14,904,543	8,218	Blanc-Mathieu R et al., 2017
122	Ostreococcus tauri RCC4221 v3.0	12,916,858	7,669	Blanc-Mathieu R et al., 2014
123	Cryptophyceae sp. CCMP2293 v1.0	534,466,773	33,051	Dorrell RG et al., 2023
124	Pavlovales sp. CCMP2436 v1.0	165,407,586	26,034	Dorrell RG et al., 2023
125	Pelagophyceae sp. CCMP2097 v1.0	85,824,453	19,402	Dorrell RG et al., 2023
126	Ochromonadaceae sp. CCMP2298 v1.0	61,140,752	20,195	Dorrell RG et al., 2023
127	Symbiochloris reticulata Spain reference genome v1.0	58,316,282	12,582
128	Micromonas commoda NOUM17 (RCC 299)	20,989,326	10,262	Worden AZ et al., 2009
129	Micromonas pusilla CCMP1545	21,945,545	9,829	Worden AZ et al., 2009
130	Asterochloris glomerata Cgr/DA1pho v2.0	55,816,160	10,025	Armaleo D et al., 2019
131	Emiliania huxleyi CCMP1516 v1.0	167,727,055	33,341	Read BA et al., 2013
132	Phytophthora sojae v3.0	82,601,618	26,584	Tyler BM et al., 2006
133	Phytophthora ramorum v1.1	66,652,401	15,743	Tyler BM et al., 2006
134	Aureococcus anophagefferens clone 1984 v1.0	56,660,578	11,501	Gobler CJ et al., 2011
135	Naegleria gruberi v1.0	40,964,085	15,763	Fritz-Laylin LK et al., 2010
136	Phaeodactylum tricornutum	1,311,968	377	Bowler C et al., 2008
137	Chlorella variabilis NC64A v1.0	46,159,515	9,791	Blanc G et al., 2010
138	Selaginella moellendorffii v1.0		22,285	Banks JA et al., 2011
139	Ostreococcus lucimarinus	13,204,888		Palenik B et al., 2007
140	Ostreococcus sp. RCC809	13,296,292	3,174
141	Physcomitrium patens v1.1	479,985,347	35,938	Rensing SA et al., 2008
142	Arabidopsis lyrata	206,667,935		Hu TT et al., 2011
143	Schizochytrium aggregatum ATCC 28209 v1.0	40,854,260	10,612
144	Aplanochytrium kerguelense PBS07 v1.0	35,774,161	11,892
145	Aurantiochytrium limacinum ATCC MYA-1381 v1.0	60,926,267	14,859
146	Phytophthora cinnamomi var cinnamomi v1.0	77,967,402	26,131
147	Pseudo-nitzschia multiseries CLN-47	218,730,801	19,703
148	Bigelowiella natans CCMP2755 v1.0	94,701,163	21,708	Curtis BA et al., 2012
149	Guillardia theta CCMP2712 v1.0	87,159,915	24,840	Curtis BA et al., 2012
150	Phytophthora capsici LT1534 v11.0	64,023,748	19,805	Lamour KH et al., 2012
151	Fragilariopsis cylindrus CCMP 1102	80,540,407	21,066	Mock T et al., 2017
152	Thalassiosira pseudonana CCMP 1335	1,135,583	386	Bowler C et al., 2008
153	Phaeodactylum tricornutum CCAP 1055/1 v2.0	26,138,756	10,025	Bowler C et al., 2008
154	Thalassiosira pseudonana CCMP 1335 v3.0	31,301,782	11,390	Armbrust EV et al., 2004
155	Saccharina japonica str. Ja	548,536,073	18,732	Ye N et al., 2015
156	Klebsormidium nitens NIES-2285	103,921,766	16,132	Hori K et al., 2014
157	Monoraphidium neglectum SAG 48.87	69,711,829	16,755	Bogen C et al., 2013
158	Bathycoccus prasinos RCC1105	15,074,320	7,900	Moreau H et al., 2012
159	Gonium pectorale NIES-2863	148,806,073	16,290	Hanschen ER et al., 2016
160	Dunaliella salina CCAP19/18	343,704,392	18,801	Polle Juergen E. W. et al., 2017
161	Populus trichocarpa v1.1	485,510,911	45,555	Tuskan GA et al., 2006