Info • Phycocosm
## Name Assembly Length # Genes Published
1 Alaria esculenta A1 487,803,962 18,078 Bringloe TT et al., 2022
2 Amoebophrya ceratii AT5.2 87,690,817 19,925 John U et al., 2019
3 Aplanochytrium kerguelense PBS07 v1.0 35,774,161 11,892
4 Arabidopsis lyrata 206,667,935 NO DATA Hu TT et al., 2011
5 Asterochloris glomerata Cgr/DA1pho v2.0 55,816,160 10,025 Armaleo D et al., 2019
6 Astrephomene gubernaculifera NIES-4017 103,829,650 13,067 Yamashita S et al., 2021
7 Aurantiochytrium limacinum ATCC MYA-1381 v1.0 60,926,267 14,859
8 Aureococcus anophagefferens clone 1984 v1.0 56,660,578 11,501 Gobler CJ et al., 2011
9 Auxenochlorella protothecoides 0710 22,924,637 7,013 Gao C et al., 2014
10 Auxenochlorella protothecoides UTEX 25 21,217,637 6,041 Vogler Brian W. et al., 2018
11 Bathycoccus prasinos RCC1105 15,074,320 7,900 Moreau H et al., 2012
12 Bigelowiella natans CCMP2755 v1.0 94,701,163 21,708 Curtis BA et al., 2012
13 Blastocystis hominis Singapore isolate B (sub-type 7) 18,817,245 6,020 Denoeud F et al., 2011
14 Botryococcus braunii Showa 170,200,492 13,943 Browne DR et al., 2017
15 Breviolum minutum 609,476,485 47,014 Shoguchi E et al., 2013
16 Cafeteria roenbergensis BVI 36,283,887 8,555 Hackl T et al., 2020
17 Caulerpa lentillifera 28,654,260 8,818 Arimoto A et al., 2019
18 Chaetoceros tenuissimus NIES-3715 41,001,288 17,253 Hongo Y et al., 2021
19 Chara braunii S276 1,750,992,823 35,672 Nishiyama T et al., 2018
20 Chlamydomonas eustigma NIES-2499 66,605,202 14,061 Hirooka S et al., 2017
21 Chlamydomonas incerta SAG 7.73 129,236,421 16,957 Craig RJ et al., 2021
22 Chlamydomonas priscuii UWO241 211,641,456 14,754 Stahl-Rommel S et al., 2022
23 Chlamydomonas reinhardtii CC-4532 v6.1 114,035,500 16,090 Craig RJ et al., 2023
24 Chlamydomonas reinhardtii CC-503 v5.6 111,100,715 16,403 Merchant SS et al., 2007
25 Chlamydomonas schloesseri CCAP 11/173 130,201,002 16,268 Craig RJ et al., 2021
26 Chlorella sp. A99 40,934,037 8,298 Hamada M et al., 2018
27 Chlorella sorokiniana DOE1412 57,881,618 12,611 Hovde Blake T. et al., 2018
28 Chlorella sorokiniana UTEX 1230 58,534,920 12,871 Hovde Blake T. et al., 2018
29 Chlorella sorokiniana UTEX 1602 59,371,605 10,384 Arriola MB et al., 2018
30 Chlorella sorokiniana str. 1228 61,391,260 12,169 Hovde Blake T. et al., 2018
31 Chlorella variabilis NC64A v1.0 46,159,515 9,791 Blanc G et al., 2010
32 Chlorokybus atmophyticus CCAC 0220 74,335,726 8,693 Wang S et al., 2020
33 Chloromonas remiasii CCCryo 005-99 v1.0 493,134,015 38,828
34 Chloropicon primus CCMP1205 17,400,691 8,327 Lemieux C et al., 2019
35 Chondrus crispus Stackhouse 104,980,420 9,808 Collén J et al., 2013
36 Chromera velia CCMP2878 193,889,730 24,133 Woo YH et al., 2015
37 Chromochloris zofingiensis SAG 211-14 v5.0 60,130,699 15,274 Roth MS et al., 2017
38 Chrysochromulina parva Lackey 65,764,750 28,185
39 Chrysochromulina tobin CCMP291 59,073,094 16,770 Hovde BT et al., 2015
40 Cladocopium goreaui SCF055-01 1,027,792,016 35,913 Liu H et al., 2018
41 Cladosiphon okamuranus S strain 169,730,755 14,750 Nishitsuji K et al., 2016
42 Coccomyxa subellipsoidea C-169 v3.0 48,852,666 10,893 Blanc G et al., 2012
43 Cryptophyceae sp. CCMP2293 v1.0 534,466,773 33,051 Dorrell RG et al., 2023
44 Cyanidioschyzon merolae Soos 12,336,830 4,406 Rossoni AW et al., 2019
45 Cyanidioschyzon merolae strain 10D 16,546,747 4,803 Nozaki H et al., 2007
46 Cyanophora paradoxa CCMP329 98,351,904 25,518 Price DC et al., 2019
47 Cyclotella cryptica CCMP332 v2.0 171,139,483 14,429 Traller JC et al., 2016
48 Desmodesmus armatus UTEX B 2533 v2.0 122,633,162 15,634
49 Diacronema lutheri NIVA-4/92 43,502,671 13,777 Hulatt CJ et al., 2021
50 Dunaliella salina CCAP19/18 343,704,392 18,801 Polle Juergen E. W. et al., 2017
51 Ectocarpus siliculosus Ec 32 195,810,619 16,271 Cock JM et al., 2010
52 Edaphochlamys debaryana CCAP 11/70 142,143,002 20,450 Craig RJ et al., 2021
53 Emiliania huxleyi CCMP1516 v1.0 167,727,055 33,341 Read BA et al., 2013
54 Enallax costatus CCAP 276/31 v1.1 127,564,975 19,308
55 Fistulifera solaris JPCC DA0580 49,736,633 20,413 Tanaka T et al., 2015
56 Flechtneria rotunda SEV3VF49 v1.1 76,784,650 16,599
57 Fragilaria crotonensis SAG 28.96 61,849,504 18,721 Zepernick BN et al., 2022
58 Fragilariopsis cylindrus CCMP 1102 80,540,407 21,066 Mock T et al., 2017
59 Fugacium kawagutii CCMP2468 1,048,482,934 26,609 Lin S et al., 2015
60 Galdieria phlegrea Soos 14,871,243 6,125 Rossoni AW et al., 2019
61 Galdieria sulphuraria 002 14,106,382 5,912 Rossoni AW et al., 2019
62 Galdieria sulphuraria 074W 13,712,004 7,174 Schönknecht G et al., 2013
63 Galdieria sulphuraria 5572 14,288,869 6,472 Rossoni AW et al., 2019
64 Galdieria sulphuraria Azora 14,055,766 6,305 Rossoni AW et al., 2019
65 Galdieria sulphuraria MS1 14,906,717 7,441 Rossoni AW et al., 2019
66 Galdieria sulphuraria MtSh 14,998,623 6,160 Rossoni AW et al., 2019
67 Galdieria sulphuraria RT22 15,626,563 6,982 Rossoni AW et al., 2019
68 Galdieria sulphuraria SAG 21.92 14,317,600 5,956 Rossoni AW et al., 2019
69 Galdieria sulphuraria YNP5578.1 14,439,647 6,118 Rossoni AW et al., 2019
70 Giardia intestinalis ATCC 50803 11,213,615 6,502 Morrison HG et al., 2007
71 Gonium pectorale NIES-2863 148,806,073 16,290 Hanschen ER et al., 2016
72 Gracilaria domingensis SP 400837 77,739,776 9,746 Nakamura-Gouvea N et al., 2022
73 Gracilariopsis chorda isolate SKKU-2015 92,180,038 10,806 Lee J et al., 2018
74 Guillardia theta CCMP2712 v1.0 87,159,915 24,840 Curtis BA et al., 2012
75 Helicosporidium sp. ATCC 50920 12,373,820 5,602 Pombert JF et al., 2014
76 Hondaea fermentalgiana CCAP_4062/3 38,943,350 11,853 Seddiki K et al., 2018
77 Hyaloperonospora arabidopsidis Emoy2 v2.0 78,897,814 9,138 Baxter L et al., 2010
78 Hyphochytrium catenoides ATCC 18719 68,540,538 18,481 Leonard G et al., 2018
79 Klebsormidium nitens NIES-2285 v1.1 103,921,766 15,568 Hori K et al., 2014
80 Labyrinthula sp. SR_Ha_C 50,948,119 8,488 Tan MH et al., 2021
81 Macrocystis pyrifera CI_03 v1.0 537,452,659 25,919
82 Mayamaea pseudoterrestris NIES-4280 30,627,229 10,680 Suzuki S et al., 2022
83 Mesostigma viride CCAC 1140 281,412,241 8,789 Wang S et al., 2020
84 Mesostigma viride NIES-296 441,698,809 16,232 Liang Z et al., 2020
85 Mesotaenium endlicherianum SAG12.97 173,768,482 10,300 Cheng S et al., 2019
86 Mesotaenium kramstae Lemmermann NIES-657 v3.0 331,691,281 15,982
87 Micractinium conductrix SAG 241.80 60,773,875 10,070 Arriola MB et al., 2018
88 Microglena sp. YARC 572,689,865 19,590 Ye N et al., 2022
89 Micromonas commoda NOUM17 (RCC 299) 20,989,326 10,262 Worden AZ et al., 2009
90 Micromonas pusilla CCMP1545 21,945,545 9,829 Worden AZ et al., 2009
91 Micromonas sp. AD1 metagenome extracted assembly 21,112,593 11,269 Duncan A et al., 2022
92 Minidiscus variabilis CCMP495 v1.0 76,188,022 25,179
93 Monodopsis strain C141 60,466,283 12,961 Yang HP et al., 2021
94 Monodopsis strain C73 59,696,957 12,958 Yang HP et al., 2021
95 Monoraphidium minutum 26B-AM v1.0 68,170,630 15,337 Calhoun Sara et al., 2022
96 Monoraphidium neglectum SAG 48.87 69,711,829 16,755 Bogen C et al., 2013
97 Naegleria gruberi v1.0 40,964,085 15,763 Fritz-Laylin LK et al., 2010
98 Nannochloris desiccata UTEX 2437 20,738,005 7,973 Sanders CK et al., 2022
99 Nannochloris desiccata UTEX 2526 21,550,525 8,818 Sanders CK et al., 2022
100 Nannochloropsis gaditana B-31 27,589,342 10,929 Corteggiani Carpinelli E et al., 2014
101 Nannochloropsis gaditana CCMP1894 30,865,741 8,928 Schwartz AS et al., 2018
102 Nannochloropsis oceanica CCMP1779 v2.0 36,454,932 10,641
103 Nannochloropsis salina CCMP1776 27,757,252 8,927 Ohan JA et al., 2019
104 Nemacystus decipiens Onna-1 153,973,811 17,099 Nishitsuji K et al., 2019
105 Nitzschia inconspicua GAI-293 v2.0 99,706,970 17,968 Oliver A et al., 2021
106 Nitzschia putrida NIES-4239 34,998,307 13,794 Kamikawa R et al., 2022
107 Ochromonadaceae sp. CCMP2298 v1.0 61,140,752 20,195 Dorrell RG et al., 2023
108 Ochromonas sp. CCMP1393 v1.4 56,491,843 19,714
109 Ostreobium quekettii SAG 6.99 151,902,089 9,649 Iha Cintia et al., 2021
110 Ostreococcus lucimarinus 13,204,888 NO DATA Palenik B et al., 2007
111 Ostreococcus sp. RCC809 13,296,292 3,174
112 Ostreococcus tauri RCC1115 v1.0 14,904,543 8,218 Blanc-Mathieu R et al., 2017
113 Ostreococcus tauri RCC4221 v3.0 12,916,858 7,669 Blanc-Mathieu R et al., 2014
114 Oxytricha trifallax JRB310 67,158,112 24,578 Swart EC et al., 2013
115 Paramecium tetraurelia d4_2 72,094,543 39,580 Aury JM et al., 2006
116 Paraphysomonas imperforata CCMP1604 v1.4 67,191,102 17,134
117 Paulinella micropora KR01 707,124,085 15,326 Lhee D et al., 2021
118 Pavlovales sp. CCMP2436 v1.0 165,407,586 26,034 Dorrell RG et al., 2023
119 Pedinomonas minor SAG 1965-3 54,966,539 10,504 Xu Y et al., 2022
120 Pedinophyceae sp. YPF-701 27,899,919 7,759 Repetti SI et al., 2022
121 Pelagophyceae sp. CCMP2097 v1.0 85,824,453 19,402 Dorrell RG et al., 2023
122 Phaeocystis antarctica CCMP1374 v2.2 198,936,094 37,754
123 Phaeocystis globosa Pg-G v2.3 155,849,266 30,220
124 Phaeodactylum tricornutum 1,311,968 377 Bowler C et al., 2008
125 Phaeodactylum tricornutum CCAP 1055/1 v2.0 26,138,756 10,025 Bowler C et al., 2008
126 Physcomitrium patens v1.1 479,985,347 35,938 Rensing SA et al., 2008
127 Phytophthora capsici LT1534 v11.0 64,023,748 19,805 Lamour KH et al., 2012
128 Phytophthora cinnamomi var cinnamomi v1.0 77,967,402 26,131
129 Phytophthora infestans T30-4 228,543,505 17,797 Haas BJ et al., 2009
130 Phytophthora ramorum v1.1 66,652,401 15,743 Tyler BM et al., 2006
131 Phytophthora sojae v3.0 82,601,618 26,584 Tyler BM et al., 2006
132 Picochlorum renovo 14,391,424 9,010 Dahlin LR et al., 2019
133 Picochlorum soloecismus DOE101 15,252,578 6,861 Gonzalez-Esquer CR et al., 2018
134 Picocystis sp. ML 29,463,432 5,613 Junkins EN et al., 2019
135 Plasmodium falciparum 3D7 23,326,872 5,392 Gardner MJ et al., 2002
136 Polarella glacialis CCMP1383 2,984,680,192 37,736 Stephens TG et al., 2020
137 Polarella glacialis CCMP2088 2,756,104,381 34,066 Stephens TG et al., 2020
138 Populus trichocarpa v1.1 485,510,911 45,555 Tuskan GA et al., 2006
139 Porphyra umbilicalis isolate 4086291 87,888,981 13,567 Brawley SH et al., 2017
140 Porphyridium purpureum CCMP1328 22,192,338 8,278 Bhattacharya D et al., 2013
141 Prasinoderma coloniale CCMP1413 25,323,194 7,139 Li L et al., 2020
142 Proteomonas sulcata CCMP 1175 v1.1 270,343,095 34,130
143 Pseudo-nitzschia multiseries CLN-47 218,730,801 19,703
144 Pyropia yezoensis U-51 43,483,963 10,327 Nakamura Y et al., 2013
145 Raphidocelis subcapitata NIES-35 51,162,697 13,088 Suzuki S et al., 2018
146 Raphidocelis subcapitata NIES-35 51,162,697 13,383 Suzuki S et al., 2018
147 Reticulomyxa filosa 101,867,045 39,963 Glöckner G et al., 2014
148 Saccharina japonica str. Ja 548,536,073 18,732 Ye N et al., 2015
149 Saprolegnia parasitica CBS 223.65 53,093,248 20,113 Jiang RH et al., 2013
150 Scenedesmus obliquus EN0004 v1.0 100,077,845 15,053
151 Scenedesmus obliquus UTEX 3031 205,013,584 13,349
152 Scenedesmus obliquus UTEX 393 107,715,903 16,779 Carreres B. M. et al., 2017
153 Scenedesmus obliquus UTEX 393 v2.0 107,859,680 19,017
154 Scenedesmus obliquus var. DOE0013 v1.0 102,771,905 15,938
155 Scenedesmus obliquus var. UTEX 1450 v1.0 104,043,312 16,565
156 Scenedesmus obliquus var. UTEX2630 v1.0 106,020,692 16,604
157 Scenedesmus sp. NREL 46B-D3 v1.0 151,896,789 17,399 Calhoun S et al., 2021
158 Schizochytrium aggregatum ATCC 28209 v1.0 40,854,260 10,612
159 Selaginella moellendorffii v1.0 NO DATA 22,285 Banks JA et al., 2011
160 Seminavis robusta D6 125,572,603 37,455 Osuna-Cruz CM et al., 2020
161 Sorghum bicolor 738,540,932 35,899 Paterson AH et al., 2009
162 Spirogloea muscicola CCAC 0214 171,136,975 24,093 Cheng S et al., 2019
163 Symbiochloris reticulata Africa extracted metagenome v1.0 58,569,719 12,720
164 Symbiochloris reticulata Scotland extracted metagenome v1.0 59,360,525 12,315
165 Symbiochloris reticulata Spain extracted metagenome v1.0 56,841,181 12,144
166 Symbiochloris reticulata Spain reference genome v1.0 58,316,282 12,582
167 Symbiochloris reticulata Switzerland extracted metagenome v1.0 59,348,134 12,701
168 Symbiodinium microadriaticum CCMP2467 808,226,712 43,403 Aranda M et al., 2016
169 Tetrabaena socialis NIES-571 135,779,852 14,296 Featherston J et al., 2018
170 Tetradesmus deserticola SNI-2 v1.1 198,160,740 17,197
171 Tetradesmus obliquus UTEX 72 v1.1 107,156,682 16,985
172 Tetrahymena thermophila SB210 103,014,375 26,994 Eisen JA et al., 2006
173 Tetraselmis striata 232,085,675 46,696 Steadman Tyler CR et al., 2019
174 Thalassiosira oceanica CCMP1005 92,185,637 34,642 Lommer M et al., 2012
175 Thalassiosira pseudonana CCMP 1335 1,135,583 386 Bowler C et al., 2008
176 Thalassiosira pseudonana CCMP 1335 v3.0 31,301,782 11,390 Armbrust EV et al., 2004
177 Toxoplasma gondii ME49 65,668,120 8,318 Kissinger JC et al., 2003
178 Trebouxia sp. A1-2 52,896,788 13,918 Greshake Tzovaras B et al., 2020
179 Tribonema minus UTEX B 3156 v1.0 158,345,074 18,290 Mahan KM et al., 2021
180 Trichomonas vaginalis G3 176,420,065 59,679 Carlton JM et al., 2007
181 Trypanosoma brucei brucei TREU927 26,075,494 8,787 Berriman M et al., 2005
182 Ulva mutabilis Foyn 98,484,689 12,920 De Clerck O et al., 2018
183 Undaria pinnatifida M23 511,280,173 14,300 Shan T et al., 2020
184 Vischeria strain C74 106,485,303 15,625 Yang HP et al., 2021
185 Vitrella brassicaformis CCMP3155 72,700,666 21,239 Woo YH et al., 2015
186 Volvox carteri v2.1 131,163,211 13,076 Prochnik SE et al., 2010
187 Zygnema cf. cylindricum SAG 698-1a 359,785,760 14,200 Feng Xuehuan et al., 2023
188 Zygnema circumcarinatum SAG 698-1b 70,999,792 10,678 Feng Xuehuan et al., 2023
189 Zygnema circumcarinatum UTEX 1559 71,310,527 12,038 Feng Xuehuan et al., 2023
190 Zygnema circumcarinatum UTEX 1560 67,280,745 12,436 Feng Xuehuan et al., 2023