Info • Phycocosm
## Name Assembly Length # Genes Published
1 Amoebophrya ceratii AT5.2 87,690,817 19,925 John U et al., 2019
2 Aplanochytrium kerguelense PBS07 v1.0 35,774,161 11,892
3 Arabidopsis lyrata 206,667,935 NO DATA Hu TT et al., 2011
4 Asterochloris glomerata Cgr/DA1pho v2.0 55,816,160 10,025 Armaleo D et al., 2019
5 Aurantiochytrium limacinum ATCC MYA-1381 v1.0 60,926,267 14,859
6 Aureococcus anophagefferens clone 1984 v1.0 56,660,578 11,501 Gobler CJ et al., 2011
7 Auxenochlorella protothecoides 0710 22,924,637 7,013 Gao C et al., 2014
8 Auxenochlorella protothecoides UTEX 25 21,217,637 6,041 Vogler Brian W. et al., 2018
9 Bathycoccus prasinos RCC1105 15,074,320 7,900 Moreau H et al., 2012
10 Bigelowiella natans CCMP2755 v1.0 94,701,163 21,708 Curtis BA et al., 2012
11 Blastocystis hominis Singapore isolate B (sub-type 7) 18,817,245 6,020 Denoeud F et al., 2011
12 Botryococcus braunii Showa v2.1 170,200,492 23,685 Browne DR et al., 2017
13 Breviolum minutum 609,476,485 47,014 Shoguchi E et al., 2013
14 Cafeteria roenbergensis BVI 36,283,887 8,555 Hackl T et al., 2020
15 Caulerpa lentillifera 28,654,260 8,818 Arimoto A et al., 2019
16 Chara braunii S276 1,750,992,823 35,672 Nishiyama T et al., 2018
17 Chlamydomonas eustigma NIES-2499 66,605,202 14,061 Hirooka S et al., 2017
18 Chlamydomonas incerta SAG 7.73 129,236,421 16,957 Craig RJ et al., 2021
19 Chlamydomonas priscuii UWO241 211,641,456 14,754 Stahl-Rommel S et al., 2022
20 Chlamydomonas reinhardtii CC-503 v5.6 111,100,715 16,403 Merchant SS et al., 2007
21 Chlamydomonas schloesseri CCAP 11/173 130,201,002 16,268 Craig RJ et al., 2021
22 Chlorella sp. A99 40,934,037 8,298 Hamada M et al., 2018
23 Chlorella sorokiniana DOE1412 57,881,618 12,611 Hovde Blake T. et al., 2018
24 Chlorella sorokiniana UTEX 1230 58,534,920 12,871 Hovde Blake T. et al., 2018
25 Chlorella sorokiniana UTEX 1602 59,371,605 10,384 Arriola MB et al., 2018
26 Chlorella sorokiniana str. 1228 61,391,260 12,169 Hovde Blake T. et al., 2018
27 Chlorella variabilis NC64A v1.0 46,159,515 9,791 Blanc G et al., 2010
28 Chlorokybus atmophyticus CCAC 0220 74,335,726 9,300 Wang S et al., 2020
29 Chloropicon primus CCMP1205 17,400,691 8,327 Lemieux C et al., 2019
30 Chondrus crispus Stackhouse 104,980,420 9,808 Collén J et al., 2013
31 Chromera velia CCMP2878 193,889,730 24,133 Woo YH et al., 2015
32 Chromochloris zofingiensis SAG 211-14 v5.0 60,130,699 15,274 Roth MS et al., 2017
33 Chrysochromulina parva Lackey 65,764,750 28,185
34 Chrysochromulina tobin CCMP291 59,073,094 16,770 Hovde BT et al., 2015
35 Cladocopium goreaui SCF055-01 1,027,792,016 35,913 Liu H et al., 2018
36 Cladosiphon okamuranus S strain 169,730,755 14,750 Nishitsuji K et al., 2016
37 Coccomyxa subellipsoidea C-169 v3.0 48,852,666 10,893 Blanc G et al., 2012
38 Cryptophyceae sp. CCMP2293 v1.0 534,466,773 33,051 Dorrell RG et al., 2023
39 Cyanidioschyzon merolae Soos 12,336,830 4,406 Rossoni AW et al., 2019
40 Cyanidioschyzon merolae strain 10D 16,546,747 4,803 Nozaki H et al., 2007
41 Cyanophora paradoxa CCMP329 98,351,904 25,518 Price DC et al., 2019
42 Cyclotella cryptica CCMP322 161,759,242 21,121 Traller JC et al., 2016
43 Desmodesmus armatus UTEX B 2533 v2.0 122,633,162 15,634
44 Dunaliella salina CCAP19/18 343,704,392 18,801 Polle Juergen E. W. et al., 2017
45 Ectocarpus siliculosus Ec 32 195,810,619 16,271 Cock JM et al., 2010
46 Edaphochlamys debaryana CCAP 11/70 142,143,002 20,450 Craig RJ et al., 2021
47 Emiliania huxleyi CCMP1516 v1.0 167,727,055 33,341 Read BA et al., 2013
48 Enallax costatus CCAP 276/31 v1.1 127,564,975 19,308
49 Fistulifera solaris JPCC DA0580 49,736,633 20,413 Tanaka T et al., 2015
50 Flechtneria rotunda SEV3VF49 v1.1 76,784,650 16,599
51 Fragilariopsis cylindrus CCMP 1102 80,540,407 21,066 Mock T et al., 2017
52 Fugacium kawagutii CCMP2468 1,048,482,934 26,609 Lin S et al., 2015
53 Galdieria phlegrea Soos 14,871,243 6,125 Rossoni AW et al., 2019
54 Galdieria sulphuraria 002 14,106,382 5,912 Rossoni AW et al., 2019
55 Galdieria sulphuraria 074W 13,712,004 7,174 Schönknecht G et al., 2013
56 Galdieria sulphuraria 5572 14,288,869 6,472 Rossoni AW et al., 2019
57 Galdieria sulphuraria Azora 14,055,766 6,305 Rossoni AW et al., 2019
58 Galdieria sulphuraria MS1 14,906,717 7,441 Rossoni AW et al., 2019
59 Galdieria sulphuraria MtSh 14,998,623 6,160 Rossoni AW et al., 2019
60 Galdieria sulphuraria RT22 15,626,563 6,982 Rossoni AW et al., 2019
61 Galdieria sulphuraria SAG 21.92 14,317,600 5,956 Rossoni AW et al., 2019
62 Galdieria sulphuraria YNP5578.1 14,439,647 6,118 Rossoni AW et al., 2019
63 Giardia intestinalis ATCC 50803 11,213,615 6,502 Morrison HG et al., 2007
64 Gonium pectorale NIES-2863 148,806,073 16,290 Hanschen ER et al., 2016
65 Gracilariopsis chorda isolate SKKU-2015 92,180,038 10,806 Lee J et al., 2018
66 Guillardia theta CCMP2712 v1.0 87,159,915 24,840 Curtis BA et al., 2012
67 Hondaea fermentalgiana CCAP_4062/3 38,943,350 11,853 Seddiki K et al., 2018
68 Hyaloperonospora arabidopsidis Emoy2 v2.0 78,897,814 9,138 Baxter L et al., 2010
69 Hyphochytrium catenoides ATCC 18719 68,540,538 18,481 Leonard G et al., 2018
70 Klebsormidium nitens NIES-2285 103,921,766 16,132 Hori K et al., 2014
71 Labyrinthula sp. SR_Ha_C 50,948,119 8,488 Tan MH et al., 2021
72 Mesostigma viride CCAC 1140 281,412,241 9,300 Wang S et al., 2020
73 Mesostigma viride NIES-296 441,698,809 29,795 Liang Z et al., 2020
74 Mesotaenium endlicherianum SAG 12.97 173,768,482 11,080 Cheng S et al., 2019
75 Mesotaenium kramstae Lemmermann NIES-657 v3.0 331,691,281 15,982
76 Micractinium conductrix SAG 241.80 60,773,875 10,070 Arriola MB et al., 2018
77 Microglena sp. YARC 572,689,865 19,590 Ye N et al., 2022
78 Micromonas commoda NOUM17 (RCC 299) 20,989,326 10,262 Worden AZ et al., 2009
79 Micromonas pusilla CCMP1545 21,945,545 9,829 Worden AZ et al., 2009
80 Micromonas sp. AD1 metagenome extracted assembly 21,112,593 11,269 Duncan A et al., 2022
81 Minidiscus variabilis CCMP495 v1.0 76,188,022 25,179
82 Monoraphidium minutum 26B-AM v1.0 68,170,630 15,337 Calhoun Sara et al., 2022
83 Monoraphidium neglectum SAG 48.87 69,711,829 16,755 Bogen C et al., 2013
84 Naegleria gruberi v1.0 40,964,085 15,763 Fritz-Laylin LK et al., 2010
85 Nannochloropsis gaditana B-31 27,589,342 10,929 Corteggiani Carpinelli E et al., 2014
86 Nannochloropsis oceanica CCMP1779 v2.0 36,454,932 10,641
87 Nannochloropsis salina CCMP1776 27,757,252 8,927 Ohan JA et al., 2019
88 Nemacystus decipiens Onna-1 153,973,811 17,099 Nishitsuji K et al., 2019
89 Nitzschia inconspicua GAI-293 v2.0 99,706,970 17,968 Oliver A et al., 2021
90 Ochromonadaceae sp. CCMP2298 v1.0 61,140,752 20,195 Dorrell RG et al., 2023
91 Ochromonas sp. CCMP1393 v1.4 56,491,843 19,714
92 Ostreococcus lucimarinus 13,204,888 NO DATA Palenik B et al., 2007
93 Ostreococcus sp. RCC809 13,296,292 3,174
94 Ostreococcus tauri RCC1115 v1.0 14,904,543 8,218 Blanc-Mathieu R et al., 2017
95 Ostreococcus tauri RCC4221 v3.0 12,916,858 7,669 Blanc-Mathieu R et al., 2014
96 Oxytricha trifallax JRB310 67,158,112 24,578 Swart EC et al., 2013
97 Paramecium tetraurelia d4_2 72,094,543 39,580 Aury JM et al., 2006
98 Paraphysomonas imperforata CCMP1604 v1.4 67,191,102 17,134
99 Pavlovales sp. CCMP2436 v1.0 165,407,586 26,034 Dorrell RG et al., 2023
100 Pelagophyceae sp. CCMP2097 v1.0 85,824,453 19,402 Dorrell RG et al., 2023
101 Phaeocystis antarctica CCMP1374 v2.2 198,936,094 37,754
102 Phaeocystis globosa Pg-G v2.3 155,849,266 30,220
103 Phaeodactylum tricornutum 1,311,968 377 Bowler C et al., 2008
104 Phaeodactylum tricornutum CCAP 1055/1 v2.0 26,138,756 10,025 Bowler C et al., 2008
105 Physcomitrium patens v1.1 479,985,347 35,938 Rensing SA et al., 2008
106 Phytophthora capsici LT1534 v11.0 64,023,748 19,805 Lamour KH et al., 2012
107 Phytophthora cinnamomi var cinnamomi v1.0 77,967,402 26,131
108 Phytophthora infestans T30-4 228,543,505 17,797 Haas BJ et al., 2009
109 Phytophthora ramorum v1.1 66,652,401 15,743 Tyler BM et al., 2006
110 Phytophthora sojae v3.0 82,601,618 26,584 Tyler BM et al., 2006
111 Picochlorum renovo 14,391,424 9,010 Dahlin LR et al., 2019
112 Picochlorum soloecismus DOE101 15,252,578 6,861 Gonzalez-Esquer CR et al., 2018
113 Picocystis sp. ML 29,463,432 5,613 Junkins EN et al., 2019
114 Plasmodium falciparum 3D7 23,326,872 5,392 Gardner MJ et al., 2002
115 Populus trichocarpa v1.1 485,510,911 45,555 Tuskan GA et al., 2006
116 Porphyra umbilicalis isolate 4086291 87,888,981 13,567 Brawley SH et al., 2017
117 Porphyridium purpureum CCMP1328 22,192,338 8,278 Bhattacharya D et al., 2013
118 Prasinoderma coloniale CCMP1413 25,323,194 7,139 Li L et al., 2020
119 Pseudo-nitzschia multiseries CLN-47 218,730,801 19,703
120 Pyropia yezoensis U-51 43,483,963 10,327 Nakamura Y et al., 2013
121 Raphidocelis subcapitata NIES-35 51,162,697 13,383 Suzuki S et al., 2018
122 Reticulomyxa filosa 101,867,045 39,963 Glöckner G et al., 2014
123 Saccharina japonica str. Ja 548,536,073 18,732 Ye N et al., 2015
124 Saprolegnia parasitica CBS 223.65 53,093,248 20,113 Jiang RH et al., 2013
125 Scenedesmus obliquus EN0004 v1.0 100,077,845 15,053
126 Scenedesmus obliquus UTEX 3031 205,013,584 13,349
127 Scenedesmus obliquus UTEX 393 107,715,903 16,779 Carreres B. M. et al., 2017
128 Scenedesmus obliquus UTEX 393 v2.0 107,859,680 19,017
129 Scenedesmus obliquus UTEX B 3031 210,263,644 22,378 Starkenburg SR et al., 2017
130 Scenedesmus obliquus var. DOE0013 v1.0 102,771,905 15,938
131 Scenedesmus obliquus var. UTEX 1450 v1.0 104,043,312 16,565
132 Scenedesmus obliquus var. UTEX2630 v1.0 106,020,692 16,604
133 Scenedesmus sp. NREL 46B-D3 v1.0 151,896,789 17,399 Calhoun S et al., 2021
134 Schizochytrium aggregatum ATCC 28209 v1.0 40,854,260 10,612
135 Selaginella moellendorffii v1.0 NO DATA 22,285 Banks JA et al., 2011
136 Seminavis robusta D6 125,572,603 37,455 Osuna-Cruz CM et al., 2020
137 Sorghum bicolor 738,540,932 35,899 Paterson AH et al., 2009
138 Spirogloea muscicola CCAC 0214 171,136,975 27,137 Cheng S et al., 2019
139 Symbiochloris reticulata Africa extracted metagenome v1.0 58,569,719 12,720
140 Symbiochloris reticulata Scotland extracted metagenome v1.0 59,360,525 12,315
141 Symbiochloris reticulata Spain extracted metagenome v1.0 56,841,181 12,144
142 Symbiochloris reticulata Spain reference genome v1.0 58,316,282 12,582
143 Symbiochloris reticulata Switzerland extracted metagenome v1.0 59,348,134 12,701
144 Symbiodinium microadriaticum CCMP2467 808,226,712 43,403 Aranda M et al., 2016
145 Tetrabaena socialis NIES-571 135,779,852 14,296 Featherston J et al., 2018
146 Tetradesmus deserticola SNI-2 v1.1 198,160,740 17,197
147 Tetradesmus obliquus UTEX 72 v1.1 107,156,682 16,985
148 Tetrahymena thermophila SB210 103,014,375 26,994 Eisen JA et al., 2006
149 Tetraselmis striata 232,085,675 46,696 Steadman Tyler CR et al., 2019
150 Thalassiosira oceanica CCMP1005 92,185,637 34,642 Lommer M et al., 2012
151 Thalassiosira pseudonana CCMP 1335 1,135,583 386 Bowler C et al., 2008
152 Thalassiosira pseudonana CCMP 1335 v3.0 31,301,782 11,390 Armbrust EV et al., 2004
153 Toxoplasma gondii ME49 65,668,120 8,318 Kissinger JC et al., 2003
154 Trebouxia sp. A1-2 52,896,788 13,918 Greshake Tzovaras B et al., 2020
155 Tribonema minus UTEX B 3156 v1.0 158,345,074 18,290 Mahan KM et al., 2021
156 Trichomonas vaginalis G3 176,420,065 59,679 Carlton JM et al., 2007
157 Trypanosoma brucei brucei TREU927 26,075,494 8,787 Berriman M et al., 2005
158 Ulva mutabilis Foyn 98,484,689 12,920 De Clerck O et al., 2018
159 Undaria pinnatifida M23 511,280,173 14,300 Shan T et al., 2020
160 Vitrella brassicaformis CCMP3155 72,700,666 21,239 Woo YH et al., 2015
161 Volvox carteri v2.1 131,163,211 13,076 Prochnik SE et al., 2010