Info • Phycocosm
## Name Assembly Length # Genes Published
1 Alaria esculenta A1 487,803,962 18,078 Bringloe TT et al., 2022
2 Amoebophrya ceratii AT5.2 87,690,817 18,158 John U et al., 2019
3 Aplanochytrium kerguelense PBS07 v1.0 35,774,161 11,892
4 Arabidopsis lyrata 206,667,935 NO DATA Hu TT et al., 2011
5 Asterochloris glomerata Cgr/DA1pho v2.0 55,816,160 10,025 Armaleo D et al., 2019
6 Astrephomene gubernaculifera NIES-4017 103,829,650 13,067 Yamashita S et al., 2021
7 Aurantiochytrium limacinum ATCC MYA-1381 v1.0 60,926,267 14,859
8 Aureococcus anophagefferens clone 1984 v1.0 56,660,578 11,501 Gobler CJ et al., 2011
9 Auxenochlorella protothecoides 0710 22,924,637 7,013 Gao C et al., 2014
10 Auxenochlorella protothecoides UTEX 25 21,217,637 5,688 Vogler Brian W. et al., 2018
11 Bacillariophyceae sp. bin 90 v1.0 32,074,741 13,169
12 Bathycoccus prasinos RCC1105 15,074,320 7,900 Moreau H et al., 2012
13 Bigelowiella natans CCMP2755 v1.0 94,701,163 21,708 Curtis BA et al., 2012
14 Blastocystis hominis Singapore isolate B (sub-type 7) 18,817,245 6,020 Denoeud F et al., 2011
15 Botryococcus braunii Showa 170,200,492 13,943 Browne DR et al., 2017
16 Breviolum minutum 609,476,485 47,014 Shoguchi E et al., 2013
17 Cafeteria roenbergensis BVI 36,283,887 8,555 Hackl T et al., 2020
18 Caulerpa lentillifera 28,654,260 8,818 Arimoto A et al., 2019
19 Chaetoceros tenuissimus NIES-3715 41,001,288 17,253 Hongo Y et al., 2021
20 Chara braunii S276 1,750,992,823 35,672 Nishiyama T et al., 2018
21 Chlamydomonas eustigma NIES-2499 66,605,202 13,365 Hirooka S et al., 2017
22 Chlamydomonas incerta SAG 7.73 129,236,421 16,957 Craig RJ et al., 2021
23 Chlamydomonas priscuii UWO241 211,641,456 14,754 Stahl-Rommel S et al., 2022
24 Chlamydomonas reinhardtii CC-4532 v6.1 114,035,500 16,090 Craig RJ et al., 2023
25 Chlamydomonas reinhardtii CC-503 v5.6 111,100,715 16,403 Merchant SS et al., 2007
26 Chlamydomonas schloesseri CCAP 11/173 130,201,002 16,268 Craig RJ et al., 2021
27 Chlorella sp. A99 40,934,037 8,298 Hamada M et al., 2018
28 Chlorella sorokiniana DOE1412 57,881,618 10,257 Hovde Blake T. et al., 2018
29 Chlorella sorokiniana UTEX 1230 58,534,920 12,209 Hovde Blake T. et al., 2018
30 Chlorella sorokiniana UTEX 1602 59,371,605 9,245 Arriola MB et al., 2018
31 Chlorella sorokiniana strain 1228 61,391,260 11,701 Hovde Blake T. et al., 2018
32 Chlorella variabilis NC64A v1.0 46,159,515 9,791 Blanc G et al., 2010
33 Chlorellaceae sp. bin 3300059473_4402 v1.0 14,333,578 8,227
34 Chlorellaceae sp. bin 3300059473_4966 v1.0 14,819,488 8,098
35 Chlorokybus atmophyticus CCAC 0220 74,335,726 8,693 Wang S et al., 2020
36 Chloromonas remiasii CCCryo 005-99 v1.0 493,134,015 38,828
37 Chloropicon primus CCMP1205 17,400,691 8,504 Lemieux C et al., 2019
38 Chondrus crispus Stackhouse 104,980,420 9,808 Collén J et al., 2013
39 Chromera velia CCMP2878 193,889,730 24,133 Woo YH et al., 2015
40 Chromochloris zofingiensis var. SAG 211-14 v6.0 58,777,831 16,265
41 Chrysochromulina parva Lackey 65,764,750 24,838 Hovde Blake T. et al., 2019
42 Chrysochromulina tobin CCMP291 59,073,094 16,770 Hovde BT et al., 2015
43 Cladocopium goreaui SCF055-01 1,027,792,016 35,913 Liu H et al., 2018
44 Cladosiphon okamuranus S strain 169,730,755 14,750 Nishitsuji K et al., 2016
45 Coccomyxa subellipsoidea C-169 v3.0 48,852,666 10,893 Blanc G et al., 2012
46 Conticribra weissflogii CCMP 1336 231,500,930 19,531 Li L et al., 2021
47 Cryptophyceae sp. CCMP2293 v1.0 534,466,773 33,051 Dorrell RG et al., 2023
48 Cyanidiococcus yangmingshanensis 8.1.23 F7 12,020,148 4,748 Cho CH et al., 2023
49 Cyanidioschyzon merolae Soos 12,336,830 4,224 Rossoni AW et al., 2019
50 Cyanidioschyzon merolae strain 10D 16,546,747 4,803 Nozaki H et al., 2007
51 Cyanidium caldarium DBV 063 E5 8,787,356 4,770 Cho CH et al., 2023
52 Cyanophora paradoxa CCMP329 98,351,904 25,518 Price DC et al., 2019
53 Cyclotella cryptica CCMP332 v2.0 171,139,483 14,429 Traller JC et al., 2016
54 Desmodesmus armatus UTEX B 2533 v2.0 122,633,162 15,634
55 Diacronema lutheri NIVA-4/92 43,502,671 13,777 Hulatt CJ et al., 2021
56 Dunaliella salina CCAP19/18 343,704,392 18,801 Polle Juergen E. W. et al., 2017
57 Ectocarpus siliculosus Ec 32 195,810,619 16,271 Cock JM et al., 2010
58 Edaphochlamys debaryana CCAP 11/70 142,143,002 20,450 Craig RJ et al., 2021
59 Emiliania huxleyi CCMP1516 v1.0 167,727,055 33,341 Read BA et al., 2013
60 Enallax costatus CCAP 276/31 v1.1 127,564,975 19,308
61 Entomoneis sp. UTEX 11IV18-2A FL v1.0 459,747,087 32,720
62 Fistulifera solaris JPCC DA0580 49,736,633 14,395 Tanaka T et al., 2015
63 Flechtneria rotunda SEV3VF49 v1.1 76,784,650 16,599
64 Fragilaria crotonensis SAG 28.96 61,849,504 18,721 Zepernick BN et al., 2022
65 Fragilariopsis cylindrus CCMP 1102 80,540,407 21,066 Mock T et al., 2017
66 Fugacium kawagutii CCMP2468 1,048,482,934 26,609 Lin S et al., 2015
67 Galdieria phlegrea Soos 14,871,243 5,850 Rossoni AW et al., 2019
68 Galdieria sulphuraria 002 14,106,382 5,641 Rossoni AW et al., 2019
69 Galdieria sulphuraria 074W 13,712,004 7,174 Schönknecht G et al., 2013
70 Galdieria sulphuraria 5572 14,288,869 6,091 Rossoni AW et al., 2019
71 Galdieria sulphuraria Azora 14,055,766 5,830 Rossoni AW et al., 2019
72 Galdieria sulphuraria MS1 14,906,717 6,826 Rossoni AW et al., 2019
73 Galdieria sulphuraria MtSh 14,998,623 5,628 Rossoni AW et al., 2019
74 Galdieria sulphuraria RT22 15,626,563 6,311 Rossoni AW et al., 2019
75 Galdieria sulphuraria SAG21.92 14,317,600 5,572 Rossoni AW et al., 2019
76 Galdieria sulphuraria YNP5578.1 14,439,647 5,658 Rossoni AW et al., 2019
77 Galdieria yellowstonensis 108.79 E11 14,511,588 6,501 Cho CH et al., 2023
78 Giardia intestinalis ATCC 50803 11,213,615 6,502 Morrison HG et al., 2007
79 Gonium pectorale NIES-2863 148,806,073 16,290 Hanschen ER et al., 2016
80 Gracilaria caudata M-176 S67 30,776,005 8,185 Lipinska AP et al., 2023
81 Gracilaria chilensis NLEC103-M9 79,767,677 7,217 Lipinska AP et al., 2023
82 Gracilaria domingensis SP 400837 77,739,776 9,746 Nakamura-Gouvea N et al., 2022
83 Gracilaria gracilis GNS1m 76,009,156 8,693 Lipinska AP et al., 2023
84 Gracilaria vermiculophylla HapMaleFtJ-2017 45,957,138 6,327 Lipinska AP et al., 2023
85 Gracilariopsis chorda SKKU-2015 92,180,038 8,855 Lee J et al., 2018
86 Guillardia theta CCMP2712 v1.0 87,159,915 24,840 Curtis BA et al., 2012
87 Haematococcus lacustris Liv1 v1.2 291,505,220 21,373
88 Haematococcus lacustris NIES-144 171,794,631 28,279 Morimoto D et al., 2020
89 Helicosporidium sp. ATCC 50920 12,373,820 5,602 Pombert JF et al., 2014
90 Hondaea fermentalgiana CCAP_4062/3 38,943,350 11,853 Seddiki K et al., 2018
91 Hyaloperonospora arabidopsidis Emoy2 v2.0 78,897,814 9,138 Baxter L et al., 2010
92 Hyphochytrium catenoides ATCC 18719 68,540,538 18,481 Leonard G et al., 2018
93 Klebsormidium nitens NIES-2285 v1.1 103,921,766 15,568 Hori K et al., 2014
94 Labyrinthula sp. SR_Ha_C 50,948,119 8,488 Tan MH et al., 2021
95 Macrocystis pyrifera CI_03 v1.0 537,452,659 25,919 Diesel J et al., 2023
96 Mayamaea pseudoterrestris NIES-4280 30,627,229 10,680 Suzuki S et al., 2022
97 Mesostigma viride CCAC 1140 281,412,241 8,789 Wang S et al., 2020
98 Mesostigma viride NIES-296 441,698,809 16,232 Liang Z et al., 2020
99 Mesotaenium endlicherianum SAG12.97 173,768,482 10,300 Cheng S et al., 2019
100 Mesotaenium kramstae Lemmermann NIES-657 v3.0 331,691,281 15,982
101 Micractinium conductrix SAG 241.80 60,773,875 8,739 Arriola MB et al., 2018
102 Microglena sp. YARC 572,689,865 19,590 Ye N et al., 2022
103 Micromonas commoda NOUM17 (RCC 299) 20,989,326 10,262 Worden AZ et al., 2009
104 Micromonas pusilla CCMP1545 21,945,545 9,829 Worden AZ et al., 2009
105 Micromonas sp. AD1 metagenome extracted assembly 21,112,593 11,269 Duncan A et al., 2022
106 Minidiscus variabilis CCMP495 v1.0 76,188,022 25,179
107 Monodopsis strain C141 60,466,283 12,961 Yang HP et al., 2021
108 Monodopsis strain C73 59,696,957 12,958 Yang HP et al., 2021
109 Monoraphidium minutum 26B-AM v1.0 68,170,630 15,337 Calhoun Sara et al., 2022
110 Monoraphidium neglectum SAG 48.87 69,711,829 16,755 Bogen C et al., 2013
111 Naegleria gruberi v1.0 40,964,085 15,763 Fritz-Laylin LK et al., 2010
112 Nannochloris desiccata UTEX 2437 20,738,005 7,973 Sanders CK et al., 2022
113 Nannochloris desiccata UTEX 2526 21,550,525 8,818 Sanders CK et al., 2022
114 Nannochloropsis gaditana B-31 27,589,342 10,929 Corteggiani Carpinelli E et al., 2014
115 Nannochloropsis gaditana CCMP1894 30,865,741 8,928 Schwartz AS et al., 2018
116 Nannochloropsis oceanica C018 v1.0 26,405,595 8,768
117 Nannochloropsis oceanica CCAP849/10 29,986,049 10,044
118 Nannochloropsis oceanica CCMP1779 v2.0 36,454,932 10,641
119 Nannochloropsis salina CCMP1776 27,757,252 8,570 Ohan JA et al., 2019
120 Nemacystus decipiens Onna-1 153,973,811 17,099 Nishitsuji K et al., 2019
121 Neopyropia yezoensis U-51 43,483,963 8,598 Nakamura Y et al., 2013
122 Nitzschia inconspicua GAI-293 v2.0 99,706,970 17,968 Oliver A et al., 2021
123 Nitzschia putrida NIES-4239 34,998,307 13,794 Kamikawa R et al., 2022
124 Ochromonadaceae sp. CCMP2298 v1.0 61,140,752 20,195 Dorrell RG et al., 2023
125 Ochromonas sp. CCMP1393 v1.4 56,491,843 19,714
126 Ostreobium quekettii SAG 6.99 151,902,089 9,649 Iha Cintia et al., 2021
127 Ostreococcus lucimarinus 13,204,888 NO DATA Palenik B et al., 2007
128 Ostreococcus sp. RCC809 13,296,292 3,174
129 Ostreococcus tauri RCC1115 v1.0 14,904,543 8,218 Blanc-Mathieu R et al., 2017
130 Ostreococcus tauri RCC4221 v3.0 12,916,858 7,669 Blanc-Mathieu R et al., 2014
131 Oxytricha trifallax JRB310 67,158,112 24,578 Swart EC et al., 2013
132 Paramecium tetraurelia d4_2 72,094,543 39,580 Aury JM et al., 2006
133 Paraphysomonas imperforata CCMP1604 v1.4 67,191,102 17,134
134 Paulinella micropora KR01 707,124,085 15,326 Lhee D et al., 2021
135 Pavlovales sp. CCMP2436 v1.0 165,407,586 26,034 Dorrell RG et al., 2023
136 Pedinomonas minor SAG 1965-3 54,966,539 10,504 Xu Y et al., 2022
137 Pedinophyceae sp. YPF-701 27,899,919 7,759 Repetti SI et al., 2022
138 Pelagophyceae sp. CCMP2097 v1.0 85,824,453 19,402 Dorrell RG et al., 2023
139 Phaeocystis antarctica CCMP1374 v2.2 198,936,094 37,754
140 Phaeocystis globosa Pg-G v2.3 155,849,266 30,220
141 Phaeodactylum tricornutum 1,311,968 377 Bowler C et al., 2008
142 Phaeodactylum tricornutum CCAP 1055/1 v2.0 26,138,756 10,025 Bowler C et al., 2008
143 Physcomitrium patens v1.1 479,985,347 35,938 Rensing SA et al., 2008
144 Phytophthora capsici LT1534 v11.0 64,023,748 19,805 Lamour KH et al., 2012
145 Phytophthora cinnamomi var cinnamomi v1.0 77,967,402 26,131
146 Phytophthora infestans T30-4 228,543,505 17,797 Haas BJ et al., 2009
147 Phytophthora ramorum v1.1 66,652,401 15,743 Tyler BM et al., 2006
148 Phytophthora sojae v3.0 82,601,618 26,584 Tyler BM et al., 2006
149 Picochlorum renovo 14,391,424 9,010 Dahlin LR et al., 2019
150 Picochlorum soloecismus DOE101 15,252,578 6,861 Gonzalez-Esquer CR et al., 2018
151 Picocystis sp. ML 29,463,432 5,613 Junkins EN et al., 2019
152 Plasmodium falciparum 3D7 23,326,872 5,392 Gardner MJ et al., 2002
153 Polarella glacialis CCMP1383 2,984,680,192 37,736 Stephens TG et al., 2020
154 Polarella glacialis CCMP2088 2,756,104,381 34,066 Stephens TG et al., 2020
155 Populus trichocarpa v1.1 485,510,911 45,555 Tuskan GA et al., 2006
156 Porphyra umbilicalis isolate 4086291 87,888,981 13,567 Brawley SH et al., 2017
157 Porphyridium purpureum CCMP1328 22,192,338 8,278 Bhattacharya D et al., 2013
158 Prasinoderma coloniale CCMP1413 25,323,194 6,927 Li L et al., 2020
159 Proteomonas sulcata CCMP 1175 v1.1 270,343,095 34,130
160 Prymnesium parvum 12B1 93,538,114 22,090 Wisecaver JH et al., 2023
161 Pseudo-nitzschia multiseries CLN-47 218,730,801 19,703
162 Raphidocelis subcapitata NIES-35 51,162,697 13,088 Suzuki S et al., 2018
163 Reticulomyxa filosa 101,867,045 39,963 Glöckner G et al., 2014
164 Rhodosorus marinus CCMP1338 31,189,410 8,045 Lee Y et al., 2023
165 Saccharina japonica str. Ja 548,536,073 18,732 Ye N et al., 2015
166 Saprolegnia parasitica CBS 223.65 53,093,248 20,113 Jiang RH et al., 2013
167 Sargassum fusiforme 394,427,661 17,495 Wang S et al., 2020
168 Scenedesmus dimorphus UTEX 1237 v1.0 102,569,700 17,373
169 Scenedesmus obliquus EN0004 v1.0 100,077,845 15,053
170 Scenedesmus obliquus SAG 2326 v1.0 104,249,355 17,007
171 Scenedesmus obliquus UTEX 3031 205,013,584 13,349 Biondi Thomas C. et al., 2024
172 Scenedesmus obliquus UTEX 3031 haplotype 1 101,592,434 11,826 Biondi Thomas C. et al., 2024
173 Scenedesmus obliquus UTEX 3031 haplotype 2 103,421,150 12,494 Biondi Thomas C. et al., 2024
174 Scenedesmus obliquus UTEX 393 v2.0 107,859,680 19,017
175 Scenedesmus obliquus var. DOE0013 v1.0 102,771,905 15,938
176 Scenedesmus obliquus var. UTEX 1450 v1.0 104,043,312 16,565
177 Scenedesmus obliquus var. UTEX2630 v1.0 106,020,692 16,604
178 Scenedesmus sp. NREL 46B-D3 v1.0 151,896,789 17,399 Calhoun S et al., 2021
179 Scenedesmus sp. WC-1 v1.0 102,320,957 17,012
180 Schizochytrium aggregatum ATCC 28209 v1.0 40,854,260 10,612
181 Selaginella moellendorffii v1.0 NO DATA 22,285 Banks JA et al., 2011
182 Seminavis robusta D6 125,572,603 33,143 Osuna-Cruz CM et al., 2020
183 Sorghum bicolor 738,540,932 35,899 Paterson AH et al., 2009
184 Spirogloea muscicola CCAC 0214 171,136,975 24,093 Cheng S et al., 2019
185 Symbiochloris reticulata Africa extracted metagenome v1.0 58,569,719 12,720
186 Symbiochloris reticulata Scotland extracted metagenome v1.0 59,360,525 12,315
187 Symbiochloris reticulata Spain extracted metagenome v1.0 56,841,181 12,144
188 Symbiochloris reticulata Spain reference genome v1.0 58,316,282 12,582
189 Symbiochloris reticulata Switzerland extracted metagenome v1.0 59,348,134 12,701
190 Symbiodinium microadriaticum CCMP2467 808,226,712 43,403 Aranda M et al., 2016
191 Tetrabaena socialis NIES-571 135,779,852 12,454 Featherston J et al., 2018
192 Tetradesmus deserticola SNI-2 v1.1 198,160,740 17,197
193 Tetradesmus obliquus UTEX 72 v1.1 107,156,682 16,985
194 Tetrahymena thermophila SB210 103,014,375 26,994 Eisen JA et al., 2006
195 Tetraselmis striata 232,085,675 46,696 Steadman Tyler CR et al., 2019
196 Thalassiosira oceanica CCMP1005 92,185,637 34,642 Lommer M et al., 2012
197 Thalassiosira pseudonana CCMP 1335 1,135,583 386 Bowler C et al., 2008
198 Thalassiosira pseudonana CCMP 1335 v3.0 31,301,782 11,390 Armbrust EV et al., 2004
199 Toxoplasma gondii ME49 65,668,120 8,318 Kissinger JC et al., 2003
200 Trebouxia sp. A1-2 52,896,788 13,918 Greshake Tzovaras B et al., 2020
201 Trebouxiophyceae sp. bin 3300059473_6682 v1.0 18,077,445 8,628
202 Trebouxiophyceae sp. bin 3300059473_978 v1.0 16,200,188 7,783
203 Tribonema minus UTEX B 3156 v1.0 158,345,074 18,290 Mahan KM et al., 2021
204 Trichomonas vaginalis G3 176,420,065 59,679 Carlton JM et al., 2007
205 Trypanosoma brucei brucei TREU927 26,075,494 8,787 Berriman M et al., 2005
206 Ulva mutabilis Foyn 98,484,689 11,066 De Clerck O et al., 2018
207 Undaria pinnatifida M23 511,280,173 12,499 Shan T et al., 2020
208 Vischeria strain C74 106,485,303 15,625 Yang HP et al., 2021
209 Vitrella brassicaformis CCMP3155 72,700,666 21,239 Woo YH et al., 2015
210 Volvox africanus NIES-3780 129,328,469 12,622 Yamamoto K et al., 2021
211 Volvox carteri v2.1 131,163,211 13,076 Prochnik SE et al., 2010
212 Volvox reticuliferus NIES-3785 133,065,142 13,178 Yamamoto K et al., 2021
213 Volvox reticuliferus NIES-3786 133,961,728 12,974 Yamamoto K et al., 2021
214 Zygnema cf. cylindricum SAG 698-1a 359,785,760 14,200 Feng Xuehuan et al., 2023
215 Zygnema circumcarinatum SAG 698-1b 70,999,792 10,678 Feng Xuehuan et al., 2023
216 Zygnema circumcarinatum UTEX 1559 71,310,527 12,038 Feng Xuehuan et al., 2023
217 Zygnema circumcarinatum UTEX 1560 67,280,745 12,436 Feng Xuehuan et al., 2023