Info • Phycocosm
## Name Assembly Length # Genes Published
1 Alaria esculenta A1 487,803,962 18,078 Bringloe TT et al., 2022
2 Amoebophrya ceratii AT5.2 87,690,817 18,158 John U et al., 2019
3 Apatococcus lobatus SAG 2145 106,452,463 10,265 Puginier C et al., 2024
4 Aplanochytrium kerguelense PBS07 v1.0 35,774,161 11,892
5 Arabidopsis lyrata 206,667,935 NO DATA Hu TT et al., 2011
6 Asterochloris glomerata Cgr/DA1pho v2.0 55,816,160 10,025 Armaleo D et al., 2019
7 Astrephomene gubernaculifera NIES-4017 103,829,650 13,067 Yamashita S et al., 2021
8 Aurantiochytrium limacinum ATCC MYA-1381 v1.0 60,926,267 14,859
9 Aureococcus anophagefferens clone 1984 v1.0 56,660,578 11,501 Gobler CJ et al., 2011
10 Auxenochlorella protothecoides 0710 22,924,637 7,013 Gao C et al., 2014
11 Auxenochlorella protothecoides UTEX 25 21,217,637 5,688 Vogler Brian W. et al., 2018
12 Bacillariophyceae sp. MOSAICH1_1 v1.0 32,074,741 13,169 Boulton W et al., 2025
13 Bathycoccus prasinos RCC1105 15,074,320 7,900 Moreau H et al., 2012
14 Bigelowiella natans CCMP2755 v1.0 94,701,163 21,708 Curtis BA et al., 2012
15 Blastocystis hominis Singapore isolate B (sub-type 7) 18,817,245 6,020 Denoeud F et al., 2011
16 Botryococcus braunii Showa 170,200,492 13,943 Browne DR et al., 2017
17 Bremia lactucae SF5 115,935,664 8,303 Fletcher K et al., 2019
18 Breviolum minutum 609,476,485 47,014 Shoguchi E et al., 2013
19 Cafeteria roenbergensis BVI 36,283,887 8,555 Hackl T et al., 2020
20 Caulerpa lentillifera 28,654,260 8,818 Arimoto A et al., 2019
21 Chaetoceros tenuissimus NIES-3715 41,001,288 17,253 Hongo Y et al., 2021
22 Chara braunii S276 1,750,992,823 35,672 Nishiyama T et al., 2018
23 Chlamydomonas eustigma NIES-2499 66,605,202 13,365 Hirooka S et al., 2017
24 Chlamydomonas incerta SAG 7.73 129,236,421 16,957 Craig RJ et al., 2021
25 Chlamydomonas priscuii UWO241 211,641,456 14,754 Stahl-Rommel S et al., 2022
26 Chlamydomonas reinhardtii CC-4532 v6.1 114,035,500 16,090 Craig RJ et al., 2023
27 Chlamydomonas reinhardtii CC-503 v5.6 111,100,715 16,403 Merchant SS et al., 2007
28 Chlamydomonas schloesseri CCAP 11/173 130,201,002 16,268 Craig RJ et al., 2021
29 Chlorella sp. A99 40,934,037 8,298 Hamada M et al., 2018
30 Chlorella sorokiniana DOE1412 57,881,618 10,257 Hovde Blake T. et al., 2018
31 Chlorella sorokiniana UTEX 1230 58,534,920 12,209 Hovde Blake T. et al., 2018
32 Chlorella sorokiniana UTEX 1602 59,371,605 9,245 Arriola MB et al., 2018
33 Chlorella sorokiniana strain 1228 61,391,260 11,701 Hovde Blake T. et al., 2018
34 Chlorella variabilis NC64A v1.0 46,159,515 9,791 Blanc G et al., 2010
35 Chlorellaceae sp. bin 3300059473_4402 v1.0 14,333,578 8,227 Oliver T et al., 2024
36 Chlorellaceae sp. bin 3300059473_4966 v1.0 14,819,488 8,098 Oliver T et al., 2024
37 Chlorokybus atmophyticus CCAC 0220 74,335,726 8,693 Wang S et al., 2020
38 Chloromonas remiasii CCCryo 005-99 v1.0 493,134,015 38,828
39 Chloropicon primus CCMP1205 17,400,691 8,504 Lemieux C et al., 2019
40 Chondrus crispus Stackhouse 104,980,420 9,808 Collén J et al., 2013
41 Chromera velia CCMP2878 193,889,730 24,133 Woo YH et al., 2015
42 Chromochloris zofingiensis var. SAG 211-14 v6.0 58,777,831 16,265
43 Chrysochromulina parva Lackey 65,764,750 24,838 Hovde Blake T. et al., 2019
44 Chrysochromulina tobin CCMP291 59,073,094 16,770 Hovde BT et al., 2015
45 Cladocopium goreaui SCF055-01 1,027,792,016 35,913 Liu H et al., 2018
46 Cladosiphon okamuranus S strain 169,730,755 14,750 Nishitsuji K et al., 2016
47 Coccomyxa pringsheimii SAG 216-7 50,915,843 9,499 Puginier C et al., 2024
48 Coccomyxa subellipsoidea C-169 v3.0 48,852,666 10,893 Blanc G et al., 2012
49 Conticribra weissflogii CCMP 1336 231,500,930 19,531 Li L et al., 2021
50 Cryptophyceae sp. CCMP2293 v1.0 534,466,773 33,051 Dorrell RG et al., 2023
51 Cyanidiococcus yangmingshanensis 8.1.23 F7 12,020,148 4,748 Cho CH et al., 2023
52 Cyanidioschyzon merolae Soos 12,336,830 4,224 Rossoni AW et al., 2019
53 Cyanidioschyzon merolae strain 10D 16,546,747 4,803 Nozaki H et al., 2007
54 Cyanidium caldarium DBV 063 E5 8,787,356 4,770 Cho CH et al., 2023
55 Cyanophora paradoxa CCMP329 98,351,904 25,518 Price DC et al., 2019
56 Cyanophora paradoxa CCMP329 98,351,904 21,535 Price DC et al., 2019
57 Cyclotella cryptica CCMP332 v2.0 171,139,483 14,429 Traller JC et al., 2016
58 Cylindrotheca closterium CA1.15 DCG0923 55,068,444 20,379 Audoor S et al., 2024
59 Desmodesmus armatus UTEX B 2533 v2.0 122,633,162 15,634
60 Desmodesmus armatus isolate SE107 v1.0 116,304,009 17,675 Knoshaug Eric P. et al., 2020
61 Diacronema lutheri NIVA-4/92 43,502,671 13,777 Hulatt CJ et al., 2021
62 Dicrateria rotunda RCC4501 v1.0 86,901,460 35,250
63 Dunaliella salina CCAP19/18 343,704,392 18,801 Polle Juergen E. W. et al., 2017
64 Ectocarpus siliculosus Ec 32 195,810,619 16,271 Cock JM et al., 2010
65 Edaphochlamys debaryana CCAP 11/70 142,143,002 20,450 Craig RJ et al., 2021
66 Elliptochloris bilobata SAG 245.80 52,254,682 8,287 Puginier C et al., 2024
67 Emiliania huxleyi CCMP1516 v1.0 167,727,055 33,341 Read BA et al., 2013
68 Enallax costatus CCAP 276/31 v1.1 127,564,975 19,308
69 Entomoneis sp. UTEX 11IV18-2A FL v1.0 459,747,087 32,720
70 Euglena gracilis CCAP 1224/5Z v1.0 2,378,765,506 18,428 Chen Z et al., 2024
71 Fistulifera solaris JPCC DA0580 49,736,633 14,395 Tanaka T et al., 2015
72 Flechtneria rotunda SEV3VF49 v1.1 76,784,650 16,599
73 Fragilaria crotonensis SAG 28.96 61,849,504 18,721 Zepernick BN et al., 2022
74 Fragilariopsis cylindrus CCMP 1102 80,540,407 21,066 Mock T et al., 2017
75 Fugacium kawagutii CCMP2468 1,048,482,934 26,609 Lin S et al., 2015
76 Galdieria phlegrea Soos 14,871,243 5,850 Rossoni AW et al., 2019
77 Galdieria sulphuraria 002 14,106,382 5,641 Rossoni AW et al., 2019
78 Galdieria sulphuraria 074W 13,712,004 7,174 Schönknecht G et al., 2013
79 Galdieria sulphuraria 5572 14,288,869 6,091 Rossoni AW et al., 2019
80 Galdieria sulphuraria Azora 14,055,766 5,830 Rossoni AW et al., 2019
81 Galdieria sulphuraria MS1 14,906,717 6,826 Rossoni AW et al., 2019
82 Galdieria sulphuraria MtSh 14,998,623 5,628 Rossoni AW et al., 2019
83 Galdieria sulphuraria RT22 15,626,563 6,311 Rossoni AW et al., 2019
84 Galdieria sulphuraria SAG21.92 14,317,600 5,572 Rossoni AW et al., 2019
85 Galdieria sulphuraria YNP5578.1 14,439,647 5,658 Rossoni AW et al., 2019
86 Galdieria yellowstonensis 108.79 E11 14,511,588 6,501 Cho CH et al., 2023
87 Giardia intestinalis ATCC 50803 11,213,615 6,502 Morrison HG et al., 2007
88 Gonium pectorale NIES-2863 148,806,073 16,290 Hanschen ER et al., 2016
89 Gracilaria caudata M-176 S67 30,776,005 8,185 Lipinska AP et al., 2023
90 Gracilaria chilensis NLEC103-M9 79,767,677 7,217 Lipinska AP et al., 2023
91 Gracilaria domingensis SP 400837 77,739,776 9,746 Nakamura-Gouvea N et al., 2022
92 Gracilaria gracilis GNS1m 76,009,156 8,693 Lipinska AP et al., 2023
93 Gracilaria vermiculophylla HapMaleFtJ-2017 45,957,138 6,327 Lipinska AP et al., 2023
94 Gracilariopsis chorda SKKU-2015 92,180,038 8,855 Lee J et al., 2018
95 Guillardia theta CCMP2712 v1.0 87,159,915 24,840 Curtis BA et al., 2012
96 Haematococcus lacustris Liv1 v1.2 291,505,220 21,373
97 Haematococcus lacustris NIES-144 171,794,631 28,279 Morimoto D et al., 2020
98 Helicosporidium sp. ATCC 50920 12,373,820 5,602 Pombert JF et al., 2014
99 Hondaea fermentalgiana CCAP_4062/3 38,943,350 11,853 Seddiki K et al., 2018
100 Hyaloperonospora arabidopsidis Emoy2 v2.0 78,897,814 9,138 Baxter L et al., 2010
101 Hyphochytrium catenoides ATCC 18719 68,540,538 18,481 Leonard G et al., 2018
102 Klebsormidium nitens NIES-2285 v1.1 103,921,766 15,568 Hori K et al., 2014
103 Labyrinthula sp. SR_Ha_C 50,948,119 8,488 Tan MH et al., 2021
104 Limnomonas spitsbergensis CCryo_02-99_CH 260,248,090 14,963 Hulatt CJ et al., 2024
105 Macrocystis pyrifera CI_03 v1.0 537,452,659 25,919 Diesel J et al., 2023
106 Mayamaea pseudoterrestris NIES-4280 30,627,229 10,680 Suzuki S et al., 2022
107 Mesostigma viride CCAC 1140 281,412,241 8,789 Wang S et al., 2020
108 Mesostigma viride NIES-296 441,698,809 16,232 Liang Z et al., 2020
109 Mesotaenium endlicherianum SAG 12.97 173,768,482 10,300 Cheng S et al., 2019
110 Mesotaenium kramstae Lemmermann NIES-657 v3.0 331,691,281 15,982
111 Mesotaenium kramstae Lemmermann NIES-658 v2.0 331,172,796 14,318
112 Micractinium conductrix SAG 241.80 60,773,875 8,739 Arriola MB et al., 2018
113 Microglena sp. YARC 572,689,865 19,590 Ye N et al., 2022
114 Micromonas commoda NOUM17 (RCC 299) 20,989,326 10,262 Worden AZ et al., 2009
115 Micromonas pusilla CCMP1545 21,945,545 9,829 Worden AZ et al., 2009
116 Micromonas sp. AD1 metagenome extracted assembly 21,112,593 11,269 Duncan A et al., 2022
117 Minidiscus variabilis CCMP495 v1.0 76,188,022 25,179
118 Monodopsis strain C141 60,466,283 12,961 Yang HP et al., 2021
119 Monodopsis strain C73 59,696,957 12,958 Yang HP et al., 2021
120 Monoraphidium minutum 26B-AM v1.0 68,170,630 15,337 Calhoun Sara et al., 2022
121 Monoraphidium neglectum SAG 48.87 69,711,829 16,755 Bogen C et al., 2013
122 Myrmecia bisecta SAG 2043 83,484,054 11,697 Puginier C et al., 2024
123 Naegleria gruberi v1.0 40,964,085 15,763 Fritz-Laylin LK et al., 2010
124 Nannochloris desiccata UTEX 2437 20,738,005 7,973 Sanders CK et al., 2022
125 Nannochloris desiccata UTEX 2526 21,550,525 8,818 Sanders CK et al., 2022
126 Nannochloropsis gaditana B-31 27,589,342 10,929 Corteggiani Carpinelli E et al., 2014
127 Nannochloropsis gaditana CCMP1894 30,865,741 8,928 Schwartz AS et al., 2018
128 Nannochloropsis oceanica C018 v1.0 26,405,595 8,768 Estrada-Graf A et al., 2025
129 Nannochloropsis oceanica CCAP849/10 29,986,049 10,044
130 Nannochloropsis oceanica CCMP1779 v2.0 36,454,932 10,641
131 Nannochloropsis salina CCMP1776 27,757,252 8,570 Ohan JA et al., 2019
132 Nemacystus decipiens Onna-1 153,973,811 17,099 Nishitsuji K et al., 2019
133 Neopyropia yezoensis U-51 43,483,963 8,598 Nakamura Y et al., 2013
134 Nereocystis luetkeana NB12FB3 v1.0 449,789,163 22,952
135 Nitzschia inconspicua GAI-293 v2.0 99,706,970 17,968 Oliver A et al., 2021
136 Nitzschia putrida NIES-4239 34,998,307 13,794 Kamikawa R et al., 2022
137 Ochromonadaceae sp. CCMP2298 v1.0 61,140,752 20,195 Dorrell RG et al., 2023
138 Ochromonas sp. CCMP1393 v1.4 56,491,843 19,714
139 Ostreobium quekettii SAG 6.99 151,902,089 9,649 Iha Cintia et al., 2021
140 Ostreococcus lucimarinus 13,204,888 NO DATA Palenik B et al., 2007
141 Ostreococcus sp. RCC809 13,296,292 3,174
142 Ostreococcus tauri RCC1115 v1.0 14,904,543 8,218 Blanc-Mathieu R et al., 2017
143 Ostreococcus tauri RCC4221 v3.0 12,916,858 7,669 Blanc-Mathieu R et al., 2014
144 Oxytricha trifallax JRB310 67,158,112 24,578 Swart EC et al., 2013
145 Paramecium tetraurelia d4_2 72,094,543 39,580 Aury JM et al., 2006
146 Paraphysomonas imperforata CCMP1604 v1.4 67,191,102 17,134
147 Parmales sp. scaly parma v1.0 30,979,897 11,651 Ban H et al., 2023
148 Paulinella micropora KR01 707,124,085 15,326 Lhee D et al., 2021
149 Pavlova sp. RCC6257 v1.0 77,856,185 24,303
150 Pavlovales sp. CCMP2436 v1.0 165,407,586 26,034 Dorrell RG et al., 2023
151 Pedinomonas minor SAG 1965-3 54,966,539 10,504 Xu Y et al., 2022
152 Pedinophyceae sp. YPF-701 27,899,919 7,759 Repetti SI et al., 2022
153 Pelagophyceae sp. CCMP2097 v1.0 85,824,453 19,402 Dorrell RG et al., 2023
154 Peronosclerospora sorghi P6 325,250,994 13,951 Fletcher K et al., 2023
155 Peronospora effusa UA202013 58,578,433 8,867 Fletcher K et al., 2022
156 Phaeocystis antarctica CCMP1374 v2.2 198,936,094 37,754
157 Phaeocystis globosa Pg-G v2.3 155,849,266 30,220
158 Phaeodactylum tricornutum 1,311,968 377 Bowler C et al., 2008
159 Phaeodactylum tricornutum CCAP 1055/1 v2.0 26,138,756 10,025 Bowler C et al., 2008
160 Physcomitrium patens v1.1 479,985,347 35,938 Rensing SA et al., 2008
161 Phytophthora capsici LT1534 v11.0 64,023,748 19,805 Lamour KH et al., 2012
162 Phytophthora cinnamomi var cinnamomi v1.0 77,967,402 26,131
163 Phytophthora infestans T30-4 228,543,505 17,797 Haas BJ et al., 2009
164 Phytophthora ramorum v1.1 66,652,401 15,743 Tyler BM et al., 2006
165 Phytophthora sojae v3.0 82,601,618 26,584 Tyler BM et al., 2006
166 Picochlorum renovo 14,391,424 9,010 Dahlin LR et al., 2019
167 Picochlorum soloecismus DOE101 15,252,578 6,861 Gonzalez-Esquer CR et al., 2018
168 Picocystis sp. ML 29,463,432 5,613 Junkins EN et al., 2019
169 Plasmodium falciparum 3D7 23,326,872 5,392 Gardner MJ et al., 2002
170 Pleodorina starrii NIES-4479 136,124,605 13,394 Takahashi K et al., 2023
171 Pleodorina starrii NIES-4481 134,979,981 13,363 Takahashi K et al., 2023
172 Polarella glacialis CCMP1383 2,984,680,192 37,736 Stephens TG et al., 2020
173 Polarella glacialis CCMP2088 2,756,104,381 34,066 Stephens TG et al., 2020
174 Populus trichocarpa v1.1 485,510,911 45,555 Tuskan GA et al., 2006
175 Porphyra umbilicalis isolate 4086291 87,888,981 13,567 Brawley SH et al., 2017
176 Porphyridium purpureum CCMP1328 22,192,338 8,278 Bhattacharya D et al., 2013
177 Prasinoderma coloniale CCMP1413 25,323,194 6,927 Li L et al., 2020
178 Proteomonas sulcata CCMP 1175 v1.1 270,343,095 34,130
179 Prymnesium parvum 12B1 93,538,114 22,090 Wisecaver JH et al., 2023
180 Pseudo-nitzschia multiseries CLN-47 218,730,801 19,703
181 Raphidocelis subcapitata NIES-35 51,162,697 13,088 Suzuki S et al., 2018
182 Reticulomyxa filosa 101,867,045 39,963 Glöckner G et al., 2014
183 Rhodosorus marinus CCMP1338 31,189,410 8,045 Lee Y et al., 2023
184 Saccharina japonica str. Ja 548,536,073 18,732 Ye N et al., 2015
185 Saccharina latissima SL-CT1-FG3 v1.0 615,545,555 NO DATA DeWeese K et al., 2025
186 Saprolegnia parasitica CBS 223.65 53,093,248 20,113 Jiang RH et al., 2013
187 Sargassum fusiforme 394,427,661 17,495 Wang S et al., 2020
188 Scenedesmus dimorphus UTEX 1237 v1.0 102,569,700 17,373
189 Scenedesmus obliquus EN0004 v1.0 100,077,845 15,053
190 Scenedesmus obliquus SAG 2326 v1.0 104,249,355 17,007
191 Scenedesmus obliquus UTEX 3031 205,013,584 13,349 Biondi Thomas C. et al., 2024
192 Scenedesmus obliquus UTEX 3031 haplotype 1 101,592,434 11,826 Biondi Thomas C. et al., 2024
193 Scenedesmus obliquus UTEX 3031 haplotype 2 103,421,150 12,494 Biondi Thomas C. et al., 2024
194 Scenedesmus obliquus UTEX 393 v2.0 107,859,680 19,017
195 Scenedesmus obliquus var. DOE0013 v1.0 102,771,905 15,938
196 Scenedesmus obliquus var. UTEX 1450 v1.0 104,043,312 16,565
197 Scenedesmus obliquus var. UTEX2630 v1.0 106,020,692 16,604
198 Scenedesmus sp. NREL 46B-D3 v1.0 151,896,789 17,399 Calhoun S et al., 2021
199 Scenedesmus sp. WC-1 v1.0 102,320,957 17,012
200 Schizochytrium aggregatum ATCC 28209 v1.0 40,854,260 10,612
201 Selaginella moellendorffii v1.0 NO DATA 22,285 Banks JA et al., 2011
202 Seminavis robusta D6 125,572,603 33,143 Osuna-Cruz CM et al., 2020
203 Sorghum bicolor 738,540,932 35,899 Paterson AH et al., 2009
204 Spirogloea muscicola CCAC 0214 171,136,975 24,093 Cheng S et al., 2019
205 Symbiochloris reticulata Africa extracted metagenome v1.0 58,569,719 12,720
206 Symbiochloris reticulata Scotland extracted metagenome v1.0 59,360,525 12,315
207 Symbiochloris reticulata Spain extracted metagenome v1.0 56,841,181 12,144
208 Symbiochloris reticulata Spain reference genome v1.0 58,316,282 12,582
209 Symbiochloris reticulata Switzerland extracted metagenome v1.0 59,348,134 12,701
210 Symbiodinium microadriaticum CCMP2467 808,226,712 43,403 Aranda M et al., 2016
211 Tetrabaena socialis NIES-571 135,779,852 12,454 Featherston J et al., 2018
212 Tetradesmus deserticola SNI-2 v1.1 198,160,740 17,197
213 Tetradesmus obliquus UTEX 72 v1.1 107,156,682 16,985
214 Tetrahymena thermophila SB210 103,014,375 26,994 Eisen JA et al., 2006
215 Tetraselmis striata 232,085,675 46,696 Steadman Tyler CR et al., 2019
216 Thalassiosira oceanica CCMP1005 92,185,637 34,642 Lommer M et al., 2012
217 Thalassiosira pseudonana CCMP 1335 1,135,583 386 Bowler C et al., 2008
218 Thalassiosira pseudonana CCMP 1335 v3.0 31,301,782 11,390 Armbrust EV et al., 2004
219 Toxoplasma gondii ME49 65,668,120 8,318 Kissinger JC et al., 2003
220 Trebouxia sp. A1-2 52,896,788 9,683 Greshake Tzovaras B et al., 2020
221 Trebouxiophyceae sp. bin 3300059473_6682 v1.0 18,077,445 8,628 Oliver T et al., 2024
222 Trebouxiophyceae sp. bin 3300059473_978 v1.0 16,200,188 7,783 Oliver T et al., 2024
223 Tribonema minus UTEX B 3156 v1.0 158,345,074 18,290 Mahan KM et al., 2021
224 Trichomonas vaginalis G3 176,420,065 59,679 Carlton JM et al., 2007
225 Triparma laevis f. inornata v1.0 42,573,550 12,794 Ban H et al., 2023
226 Trypanosoma brucei brucei TREU927 26,075,494 8,787 Berriman M et al., 2005
227 Ulva mutabilis Foyn 98,484,689 11,066 De Clerck O et al., 2018
228 Undaria pinnatifida M23 511,280,173 12,499 Shan T et al., 2020
229 Vischeria strain C74 106,485,303 15,625 Yang HP et al., 2021
230 Vitrella brassicaformis CCMP3155 72,700,666 21,239 Woo YH et al., 2015
231 Volvox africanus NIES-3780 129,328,469 12,622 Yamamoto K et al., 2021
232 Volvox carteri v2.1 131,163,211 13,076 Prochnik SE et al., 2010
233 Volvox reticuliferus NIES-3785 133,065,142 13,178 Yamamoto K et al., 2021
234 Volvox reticuliferus NIES-3786 133,961,728 12,974 Yamamoto K et al., 2021
235 Zygnema cf. cylindricum SAG 698-1a 359,785,760 14,200 Feng X et al., 2024
236 Zygnema circumcarinatum SAG 698-1b 70,999,792 10,678 Feng X et al., 2024
237 Zygnema circumcarinatum UTEX 1559 71,310,527 12,038 Feng X et al., 2024
238 Zygnema circumcarinatum UTEX 1560 67,280,745 12,436 Feng X et al., 2024